Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02496 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGGCGGGGTAATTCTGCAATGCACCAGAGGACCACCTCTACTACAACGGTTCGACTCGGACGAGTCCAGCCGCAGGCCCCTGGACATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAAGTTGGAGACATTGTTAGGACAATATCATGGATGCAGGTTCGGCAAGATGGATTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTGAAGATTAGGAAGGCCTTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTTGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATCGGCAGTGGTGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGTGAAAACCAATTCAACCCTCGCAACCGGTTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTACTCGACAATCATTCCTATTTCCCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAAGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATTTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACAGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGCACACAGATCAGCCAATGCTGTTCAAGAAAAGGGATTTAACTTCGATGATGCAAGGCTAATGAGAGGAGCATGGAGAAATGAGCCCAACGCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTTCCTGAGGGTGACGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACAACAATATATGTTCGCGAATCTCATGTTGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTGAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTCTGTCGTTATTCTGATGGCAGGCTTGTTCTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTCTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACGGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAACTGAAGAGATGTCTTGAGGAAGCGCAGCAGTGTTTACATTCTGTCTCTCCACCAAAATTAGCACTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAAGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACGTACTTCTTTTACAAGAATCTTACATTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGTCAAAGATTCTACGATGATTGGTTCCAGTCGTTGTATAATGTCATATTCACCGCCCTACCTGTAATAATAGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAAAAATGTGTTCTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACTTGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTATATTACGGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCCCATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTTATCCTTGTCCCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGTAGAGGTACGGCAGGATTGCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTACGCCATGGCTCAACTCCCTCGAGAATTATCAAAGCACACTGGCTTTGCTTTTGACTCACCTGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAAGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCAAGACCAAAGATTAAGGAAAAGAAGTAA 3699 41.2 MSGWDRVRPSSSRFGRGNSAMHQRTTSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRTISWMQVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEAHRSANAVQEKGFNFDDARLMRGAWRNEPNADLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKELILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKRCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIKNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMAQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIKEKK 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36332570 36348360 + ClCG05G024830.2 Cla05g02496 273986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02496 1232 SUPERFAMILY HAD-like 416 903 IPR036412 -
Cla05g02496 1232 CDD P-type_ATPase_APLT_Dnf-like 61 1020 - -
Cla05g02496 1232 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 833 939 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g02496 1232 SFLD Haloacid Dehalogenase 410 911 - -
Cla05g02496 1232 Gene3D - 540 692 IPR023299 GO:0000166
Cla05g02496 1232 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 23 1228 - -
Cla05g02496 1232 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Cla05g02496 1232 PRINTS P-type cation-transporting ATPase superfamily signature 428 442 - -
Cla05g02496 1232 Gene3D - 693 900 IPR023214 -
Cla05g02496 1232 ProSitePatterns E1-E2 ATPases phosphorylation site. 430 436 IPR018303 -
Cla05g02496 1232 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 698 IPR023299 GO:0000166
Cla05g02496 1232 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 23 1228 - -
Cla05g02496 1232 SFLD p-type atpase 410 911 IPR044492 -
Cla05g02496 1232 Pfam Phospholipid-translocating P-type ATPase C-terminal 888 1138 IPR032630 -
Cla05g02496 1232 SUPERFAMILY Calcium ATPase, transduction domain A 141 291 IPR008250 -
Cla05g02496 1232 Pfam Cation transport ATPase (P-type) 527 620 - -
Cla05g02496 1232 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1138 IPR023298 -
Cla05g02496 1232 MobiDBLite consensus disorder prediction 12 29 - -
Cla05g02496 1232 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 59 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla05g02496 1232 Gene3D - 124 295 - -
Cla05g02496 1232 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cla05g02496 1232 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02496 Cla-Chr5:36332570 Cla06g00811 Cla-Chr6:11384214 0 dispersed
Cla05g02496 Cla-Chr5:36332570 Cla04g01120 Cla-Chr4:26405711 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02496 K14802 - csv:101207069 2362.41