Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02500 ATGTACCAAACATGGTATCCCTCCATTAGGAGCTTAAACGACAACATGGTAAAAATGATTTGCGATTGCCAAAGCAGTGTCGGTATAAGAGGCAGCGGCGTTACCGACACGTCGGTTGCGGATTGCTGCAGCAATTTAACCTTAAGGACAAAAATAACAGAGTGCGGCGGAGTAGACGCCTTTAGTTTTGAGTCGGAAATGAACGGGTCTCGCACGTGCTCGCTGTGTGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGGGGACGTCGGCGGGTTCATGTTGTTCGGAGTTAGGGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGAGCAGCCTCAAAGTCAAGACTCCAACAACGCTGATGCCGGATACGCTTCGGACGACGTCGTTCACCCATCTGACCGTGGCGGCGGCCGGAAGAGAGGGATTCCGTGGACAGAAGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACGCGTACGTCAACTCAGTTCACGAGCTCATCCACGGAAGACGATTTGATATTTTCCGGCCACGAGGTTATGCCGCTACCGCTGCCACCGTCACAGCCGCAAAAAGACACCCTTCCGGGAAATTTCCCGGTGAAAATCTATCCAGCGAAACCACCTCCTGCCGCCGTGGCCGGTGGCGCCGTTGATAGCAACGCCGTAGAGGGTACACTAACACCAAGTTCATCAAATTATCAGGCAAAGACTTGCAGTTCCAGAATTAGTCGTCCAATACCAATGCTTCCTCTATCTCCATACCCAAAGTTGGCTGAATTGAACATTAACGAGAGAACGCCAGAAGACCCTTTACCTCTAACTTTGAAGCTTTCAACTCCACACTCGGAGGAACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 1032 51.55 MYQTWYPSIRSLNDNMVKMICDCQSSVGIRGSGVTDTSVADCCSNLTLRTKITECGGVDAFSFESEMNGSRTCSLCGNNGHNSRTCPEGDVGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYEQPQSQDSNNADAGYASDDVVHPSDRGGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQFTSSSTEDDLIFSGHEVMPLPLPPSQPQKDTLPGNFPVKIYPAKPPPAAVAGGAVDSNAVEGTLTPSSSNYQAKTCSSRISRPIPMLPLSPYPKLAELNINERTPEDPLPLTLKLSTPHSEEQSPAAASQSSGSFQTMSGGGDSIDIVSVA 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36367240 36373360 - ClCG05G024870.2 Cla05g02500 273990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02500 343 MobiDBLite consensus disorder prediction 119 154 - -
Cla05g02500 343 ProSiteProfiles Myb-like domain profile. 156 192 IPR001005 -
Cla05g02500 343 Pfam Myb-like DNA-binding domain 156 192 IPR001005 -
Cla05g02500 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 194 IPR006447 GO:0003677
Cla05g02500 343 PANTHER TRANSCRIPTION FACTOR KUA1 70 195 - -
Cla05g02500 343 MobiDBLite consensus disorder prediction 308 335 - -
Cla05g02500 343 MobiDBLite consensus disorder prediction 293 343 - -
Cla05g02500 343 SUPERFAMILY Homeodomain-like 151 195 IPR009057 -
Cla05g02500 343 ProSiteProfiles Zinc finger CCHC-type profile. 73 88 IPR001878 GO:0003676|GO:0008270
Cla05g02500 343 PANTHER TRANSCRIPTION FACTOR KUA1 70 195 - -
Cla05g02500 343 Gene3D - 157 195 - -
Cla05g02500 343 CDD SANT 156 184 IPR001005 -
Cla05g02500 343 MobiDBLite consensus disorder prediction 119 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02500 - - - csv:101207806 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02500 Cla-Chr5:36367240 Cla09g00015 Cla-Chr9:190336 1.00E-35 dispersed
Cla01g01404 Cla-Chr1:28491163 Cla05g02500 Cla-Chr5:36367240 4.30E-35 wgd
Cla05g02500 Cla-Chr5:36367240 Cla06g01627 Cla-Chr6:29790728 4.75E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61186 PF00249 Myb_DNA-binding 3.30E-06 CL0123 Cla TF