Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02508 ATGGCCAGAAACTCCATCTTCTCCCTCCGCCGGAGGTCGGATCCGTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGGTCAGTTCATCGTGTTCCCCTGTTCAATTTTCTATTCAATTTCATTCCTTCTTTCCTTTTCCTATCTGGGTCCTGTTTCGTTCTCTGGAAATTCATTTTGGGTTTGTTTGGGATTCACAGTTACTGCAGTAGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATGTAAGTACACGAAATTTCCAGTCTCCGTTTCCATGGGTTTCCATTTCTGATTTTGCTCTGTTTCATGGGTTTGAAAAACAGAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAGTCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCCCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 900 46.67 MARNSIFSLRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRGQFIVFPCSIFYSISFLLSFSYLGPVSFSGNSFWVCLGFTVTAVDSGIRALQYLGLQEETSSQVGFDVSTRNFQSPFPWVSISDFALFHGFEKQSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36447145 36448396 - ClCG05G024950.2 Cla05g02508 273998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02508 299 MobiDBLite consensus disorder prediction 228 246 - -
Cla05g02508 299 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 17 54 - -
Cla05g02508 299 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 93 291 - -
Cla05g02508 299 CDD REC_typeA_ARR 31 220 - -
Cla05g02508 299 Gene3D - 29 252 - -
Cla05g02508 299 Pfam Response regulator receiver domain 149 217 IPR001789 GO:0000160
Cla05g02508 299 SMART REC_2 106 221 IPR001789 GO:0000160
Cla05g02508 299 MobiDBLite consensus disorder prediction 228 299 - -
Cla05g02508 299 SUPERFAMILY CheY-like 149 220 IPR011006 -
Cla05g02508 299 ProSiteProfiles Response regulatory domain profile. 30 225 IPR001789 GO:0000160
Cla05g02508 299 MobiDBLite consensus disorder prediction 247 299 - -
Cla05g02508 299 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 54 IPR045279 GO:0009736
Cla05g02508 299 PANTHER TWO-COMPONENT RESPONSE REGULATOR 93 291 IPR045279 GO:0009736
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02508 K14492 ARR-A; two-component response regulator ARR-A family - csv:101209506 304.293
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02508 Cla-Chr5:36447145 Cla10g01535 Cla-Chr10:30671838 5.33E-42 dispersed
Cla05g02679 Cla-Chr5:37970439 Cla05g02508 Cla-Chr5:36447145 1.52E-29 transposed
Cla05g02508 Cla-Chr5:36447145 Cla06g01631 Cla-Chr6:29836743 1.22E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g794 . . . . . Bpe10g00821 . Bma15g00201 Cmo04g01675 . . . . . Sed06g1597 . Cpe01g01415 Bhi07g01668 Tan04g1168 Cmetu10g0771 . . . . Cla05g02508 Cam05g2692 Cec05g2725 Cco05g2760 Clacu05g2695 Cmu05g2549 Cre05g2664 . . Cone8ag0639 Cone12ag0621 Lsi04g00507 Csa05g02375 Chy10g00941 Cme10g00486 Blo06g00861 . Bda07g01573 . Bpe11g01741 . . . . . . Cma04g01600 . Car04g01645 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005399 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61188 PF00072 Response_reg 1.40E-16 CL0304 Cla TR