Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02516 | ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGATCCGAGTCGATCGAATCGGAGTCCGTATCGGTGGCCGTCGGCTAATCCTTTTGATATATTATGATTATTTATCACCGTCTCCGTCGCACACGGCGGTTATTTTGCAGGTTCAAGCGTATTACGGTTTTCAGCCGTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCCTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGGTAACACCGAAGAATGA | 1110 | 46.49 | MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKIRVDRIGVRIGGRRLILLIYYDYLSPSPSHTAVILQVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKGNTEE | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 36524494 | 36528007 | + | ClCG05G025060.1 | Cla05g02516 | 274006 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02516 | 369 | MobiDBLite | consensus disorder prediction | 331 | 353 | - | - | |
| Cla05g02516 | 369 | SMART | Cyclin_C_2 | 211 | 347 | IPR004367 | - | |
| Cla05g02516 | 369 | Gene3D | - | 203 | 339 | - | - | |
| Cla05g02516 | 369 | PANTHER | CYCLINS | 22 | 84 | IPR039361 | - | |
| Cla05g02516 | 369 | Gene3D | - | 110 | 202 | - | - | |
| Cla05g02516 | 369 | Pfam | Cyclin, N-terminal domain | 115 | 208 | IPR006671 | - | |
| Cla05g02516 | 369 | SMART | cyclin_7 | 114 | 202 | IPR013763 | - | |
| Cla05g02516 | 369 | MobiDBLite | consensus disorder prediction | 331 | 369 | - | - | |
| Cla05g02516 | 369 | SUPERFAMILY | Cyclin-like | 104 | 208 | IPR036915 | - | |
| Cla05g02516 | 369 | PANTHER | CYCLIN-D1-1 | 114 | 355 | - | - | |
| Cla05g02516 | 369 | PANTHER | CYCLIN-D1-1 | 22 | 84 | - | - | |
| Cla05g02516 | 369 | PANTHER | CYCLINS | 114 | 355 | IPR039361 | - | |
| Cla05g02516 | 369 | SUPERFAMILY | Cyclin-like | 193 | 311 | IPR036915 | - | |
| Cla05g02516 | 369 | CDD | CYCLIN | 116 | 201 | IPR013763 | - | |
| Cla05g02516 | 369 | MobiDBLite | consensus disorder prediction | 354 | 369 | - | - | |
| Cla05g02516 | 369 | Pfam | Cyclin, C-terminal domain | 211 | 321 | IPR004367 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02516 | Cla-Chr5:36524494 | Cla09g02013 | Cla-Chr9:37717358 | 1.12E-146 | dispersed | |
| Cla05g02516 | Cla-Chr5:36524494 | Cla01g01805 | Cla-Chr1:32976927 | 4.20E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02516 | K18810 | - | csv:101209417 | 577.015 |