Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02516 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGATCCGAGTCGATCGAATCGGAGTCCGTATCGGTGGCCGTCGGCTAATCCTTTTGATATATTATGATTATTTATCACCGTCTCCGTCGCACACGGCGGTTATTTTGCAGGTTCAAGCGTATTACGGTTTTCAGCCGTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCCTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGGTAACACCGAAGAATGA 1110 46.49 MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKIRVDRIGVRIGGRRLILLIYYDYLSPSPSHTAVILQVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKGNTEE 369
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 36524494 36528007 + ClCG05G025060.1 Cla05g02516 274006
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02516 369 MobiDBLite consensus disorder prediction 331 353 - -
Cla05g02516 369 SMART Cyclin_C_2 211 347 IPR004367 -
Cla05g02516 369 Gene3D - 203 339 - -
Cla05g02516 369 PANTHER CYCLINS 22 84 IPR039361 -
Cla05g02516 369 Gene3D - 110 202 - -
Cla05g02516 369 Pfam Cyclin, N-terminal domain 115 208 IPR006671 -
Cla05g02516 369 SMART cyclin_7 114 202 IPR013763 -
Cla05g02516 369 MobiDBLite consensus disorder prediction 331 369 - -
Cla05g02516 369 SUPERFAMILY Cyclin-like 104 208 IPR036915 -
Cla05g02516 369 PANTHER CYCLIN-D1-1 114 355 - -
Cla05g02516 369 PANTHER CYCLIN-D1-1 22 84 - -
Cla05g02516 369 PANTHER CYCLINS 114 355 IPR039361 -
Cla05g02516 369 SUPERFAMILY Cyclin-like 193 311 IPR036915 -
Cla05g02516 369 CDD CYCLIN 116 201 IPR013763 -
Cla05g02516 369 MobiDBLite consensus disorder prediction 354 369 - -
Cla05g02516 369 Pfam Cyclin, C-terminal domain 211 321 IPR004367 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02516 Cla-Chr5:36524494 Cla09g02013 Cla-Chr9:37717358 1.12E-146 dispersed
Cla05g02516 Cla-Chr5:36524494 Cla01g01805 Cla-Chr1:32976927 4.20E-48 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02516 K18810 - csv:101209417 577.015