Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02525 ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGTGGCGGACGGCACGGCGGCGGCGGCTCCGTCCAAATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGCGGACGGAGGCTGAAACCGGACCGCTTATTCTTGAAAACTGCTGATTATATAATGCAATTGAGCCAAACTCCAACACCATACTATCATACTCTTCTAAAACCTTCAATCAAACAATCCAATTCCCTTTCCCCAATTAATCACCCATTTCTCCCTTCTTCTTCACTCTTCTGTTTCCCATTTCGCTGTTACAATGCTATTTCCTTGACCCACCGCAATCGCTCTGCAACTCAGGGATTCTCTCGAAACTCCCTGAATCATATGCCACATGCAGTTCCAGCTCCATTTCAAGTGGATTTCCTGATGACCCAGGTTGTGAGATTACTTGTAAAGCAACGTTCCTCATCATCGTCAATGTCTGAATCCAATAGCAATAGATTCCCAGAAATGTCTGAATCATCTGCTTTTCAAAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGTCTAGATCAAGCCTTCATAGATGCACTACCTGTTTTCCTTTACAAAGAGATAGTGGGTTTAAAAGAACCGTTTGATTGTGCTGTATGTCTTTGTGAATTTTCAGCACTAGACAAGCTAAGATTGCTCCCTACTTGCAGTCATGCTTTTCACATTGATTGTATAGACACATGGTTGCTTTCTAATTCAACTTGCCCTCTTTGTAGAGGGACCCTTCACATTCACTCACCTGGACTTGCCATAGAAAACCCTGTATATGGTTTTGAAGATTCAGAAGAGACAGAAGAATCTACAGAGGATGGAAGATTTGGTATTCCTACAGCTCAAAAAGCTCCAGAGAGTGACATTATTGGTGAAAAAAGAGTGTTTTCAATCAGGCTTGGCAAATTTAGGAACTTGAATAATGGAGGATTGAGAGGATTAGAGAAAGGAGAGGGAGAAACCAGCAGTAGCAGTTTGAGTGCAAGAAGATGCTTTTCAATGGGGTCTTATCAGTATATTGTGGCTGATTCAGAGTTGCAAGTTGCGTTACGTACGAGTAATCGCATCTGTGGGGGAAGTATGAGATTTGTGAAAGTAATAAGAGATTCACAAACTGGGAATTGTCCAATTGATGGTGATGATGATGCTGAGGGGAAGAAGATTAACATTGGAAGTAAAAATGAAAGCTTTTCTGTTTCAAAAATCTGGTTATGGTCCAAGAAGACTCGACAGCCAAGTGGTTCAGACACCCATGTGCGAGCTAGTTAA 1332 42.49 MEYYNNCESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLSQTPTPYYHTLLKPSIKQSNSLSPINHPFLPSSSLFCFPFRCYNAISLTHRNRSATQGFSRNSLNHMPHAVPAPFQVDFLMTQVVRLLVKQRSSSSSMSESNSNRFPEMSESSAFQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIVGLKEPFDCAVCLCEFSALDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLHIHSPGLAIENPVYGFEDSEETEESTEDGRFGIPTAQKAPESDIIGEKRVFSIRLGKFRNLNNGGLRGLEKGEGETSSSSLSARRCFSMGSYQYIVADSELQVALRTSNRICGGSMRFVKVIRDSQTGNCPIDGDDDAEGKKINIGSKNESFSVSKIWLWSKKTRQPSGSDTHVRAS 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36605315 36609761 + ClCG05G025160.2 Cla05g02525 274015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02525 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 268 IPR013083 -
Cla05g02525 443 CDD RING-H2_PA-TM-RING 220 263 - -
Cla05g02525 443 SMART ring_2 221 262 IPR001841 -
Cla05g02525 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 146 438 - -
Cla05g02525 443 SUPERFAMILY RING/U-box 200 269 - -
Cla05g02525 443 Pfam Ring finger domain 220 263 IPR001841 -
Cla05g02525 443 ProSiteProfiles Zinc finger RING-type profile. 221 263 IPR001841 -
Cla05g02525 443 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 146 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02525 - - - csv:101210409 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02525 Cla-Chr5:36605315 Cla06g01284 Cla-Chr6:26198480 4.90E-56 dispersed
Cla01g01388 Cla-Chr1:28264637 Cla05g02525 Cla-Chr5:36605315 1.51E-79 wgd
Cla05g02525 Cla-Chr5:36605315 Cla09g01840 Cla-Chr9:36066620 4.76E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g747 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02525 Cam05g2712 Cec05g2744 Cco05g2784 Clacu05g2715 Cmu05g2569 Cre05g2682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001459 3 3 1 5 3 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 5 3 1 73