Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02533 ATGGCCAGAGCTGCCATGGGAAACGCCGACGAGAATACCGAAACTGCCCTTCTTCTTCCGAATTCAGCAAGTCCCAATAAAATTCCGAAAGATTTCTTCAATTTAACTTACATAACTTACTTCATTTTAGGCGCCGGATGCATTCTTCCATGGAACACCTTCATAACGCCATCGATTACTTTTCCCACATATACCCTCATACCCACATCAATCGGATCTTCGCCGTCGCTTATTTGCCCGTCGTCGTCACCGCCCTTCTTTTCCTCGTTTTCTTTGGTCGGCAGTGCGATGCTCGGGGGTCGAATCGGCTTGTTCAGCGGCTTCTATGTCTCCCCCGGAGCCGTCGTGATGTGCGGTGCCGCCGAGGCCCTTGTTCAAAGCGGCGTTGTTGGGTCCGCCGGGGAACTGCCGGAGAGGTATATGCAAGCTGTTGTCTCTGGGTACACGGGCTCAGGCTACGTAACAGAGGATGTTTGTTCAGAGATTTTGAAGGATTGGTATCCAATTACTCTAATAACTGGGTATTATTTGTTTGATTTGCTTGGGAAATCTCTAGCTTCGCTTTATGTTATAAAGAGTTCAAAGATTACAGTGGGATTGTGTATAGGGAGAGTGGTGTTTTACCCTCTGTTTGTGGGGTGTTTGCATGGTCCTCAATTCCTTAGAACTGAGATTCCAGTGGCCATTTTGACTTGCTTTCTTGGACTTACGAATGGCTATTTGACTGCTGTTGCCATGATCTCTGCCCCTAAATTGGTGCCGTTCCAACATGCGGAGGTTGCTGGGATTTTGATGGCTATGTTCTTGGTTTTGGGATTGGCTATTGGCTCTCTTCTTGTTTGGTTTTGGGTCATTTAG 858 47.44 MARAAMGNADENTETALLLPNSASPNKIPKDFFNLTYITYFILGAGCILPWNTFITPSITFPTYTLIPTSIGSSPSLICPSSSPPFFSSFSLVGSAMLGGRIGLFSGFYVSPGAVVMCGAAEALVQSGVVGSAGELPERYMQAVVSGYTGSGYVTEDVCSEILKDWYPITLITGYYLFDLLGKSLASLYVIKSSKITVGLCIGRVVFYPLFVGCLHGPQFLRTEIPVAILTCFLGLTNGYLTAVAMISAPKLVPFQHAEVAGILMAMFLVLGLAIGSLLVWFWVI 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36712006 36713923 + ClCG05G025260.2 Cla05g02533 274023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02533 285 Pfam Nucleoside transporter 154 284 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 27 57 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 107 152 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 152 285 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 27 57 - -
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 152 285 - -
Cla05g02533 285 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 107 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02533 K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3 - csv:101214129 226.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01638 Cla-Chr2:31188225 Cla05g02533 Cla-Chr5:36712006 3.49E-33 dispersed
Cla05g02533 Cla-Chr5:36712006 Cla06g01120 Cla-Chr6:24044556 6.41E-10 dispersed
Cla05g02533 Cla-Chr5:36712006 Cla05g02534 Cla-Chr5:36714120 5.82E-16 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g732 . . . . . Bpe10g00835 . Bma15g00189 . . . . . . . . Cpe01g01525 . . . . . . . Cla05g02533 Cam05g2723 . Cco05g2795 Clacu05g2725 . . . . . . Lsi04g00540 Csa05g02343 Chy10g00910 Cme10g00516 Blo06g00873 . . . . . . . . . . Cma04g01725 Cma05g00004 Car04g01757 Car05g00004 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001348 1 2 2 1 1 4 2 3 3 3 3 3 2 3 3 2 2 0 1 2 3 6 2 4 4 2 5 1 4 1 75