Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02538 ATGGATCTTCTCCAATCATACACAGATCAAAGCGACGAAGATGGAAGCCCTAAACAGCTTTCATCTTCACCAGAAGCCTCTCCGCCTCGACTTCTCCCCTCCAAAACCTCAGCGCCTAAGGTTGATGATACAATGTTAGCCCTCACGGTGGCGAACGCCAATCAGACCCTCTCGAAGCCAATAGACCCAACTCAACATCTCGTTGCCTTCAACCCCACTTACGACCAACTCTGGGCTCCCATTTACGGCCCATCTCATCCCTATGCCAAGGATGGCATTGCACAGGGCATGCGAAACCACAAGCTAGGGTTCGTGGAGAACGCGTCCATTGAACCATTTGTCTTCGATGAGCAGTACAACACTTTCCATAAATATGGATATGCTGCTGACCCATCAGCTTCTGCTGGAAACAATTACATTGGGGACATGGAGGCTTTGCAGAAGAATGATGCCATTTCCGTGTATAACATTCCACAGCACGAGCAAAAGAAGCGGAAGATTGAGAAAAAGAAAGAAATGAGTGAGAATGAGGATGTAGAAGAAGACTTGAACCCGGATGAAGTTGATAACCCAGCCACTGATGTGTGGTTGATGAAGAATAGGAAGAGTCCATGGTCTGGTAAGAAGGAAGGTCTGCAAACTGAGCTAACCGAGGAGCAGAAGAAATATGCAGAAGAGTATGCAAAGAAGAAAGGTGAAGAGAAAGGTGGTGAGAAGGGAGAAGTTACAGCGGATAAGAGTACGTTTCATGGTAAAGAGGAGAGGGACTACCAAGGTAGATCTTGGATTGCACCCCCGAAGGATGCCAAGGCCACAAATGATCATTGTTATATACCAAAAAGATTGGTGCATACATGGAGCGGGCACACGAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGCCATTTGATTCTTTCAGCTGGTATGGATACCAAGGTGAAGATATGGGATGTGTTCAATTCTGGTAAATGTATGAGAACCTACATGGGTCACTCTCAGGCAGTTCGGGATATTTCATTTTGTAATGATGGATCTAAGTTTTTGACAGCCGGATATGACAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTTAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGAATGAGTGATAAGAAAATCGTTCAGTGGGATATGAACACAGGACAGATTACACAAGAGTATGATCAACATTTAGGAGCAGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTTACATCAAGTGATGACAAGTCTCTCCGTGTTTGGGAATTTGGAATTCCTGTTGTCATTAAGTATATTAGTGAGCCTCACATGCATTCCATGCCCTCCATTTCTGTACATCCCAATACGAATTGGCTTGCAGCACAGAGTTTAGACAATCAGATTCTTATTTATAGCACTAGGGAGAGATTTCAGCTAAACAAGAAAAAGAGGTTTGCTGGGCACATTGTGGCAGGATATGCGTGTCAGGTTAATTTTTCTCCAGATGGACGTTTTGTTATGTCGGGTGATGGTGAGGGTAAATGCTGGTTTTGGGATTGGAAAACCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGTGTTTGCATTGGGTGTGAGTGGCATCCATTGGAACAAAGTAAAGTAGCAACGTGCGGCTGGGATGGACTGATAAAGTATTGCATGAGATATTTCTTTTTAGATAGTTCTGCAGTGAGGGTCAAATATTTGTTTAATTCAGGGACTAGATTTGAGGCTGAGATCATCTGTGGAAGCCATGTGCCTGGGATGTTTGACCAAAACTTTGAGGACAAGGAAAATTCTGGGTGA 1887 43.51 MDLLQSYTDQSDEDGSPKQLSSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSENEDVEEDLNPDEVDNPATDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYCMRYFFLDSSAVRVKYLFNSGTRFEAEIICGSHVPGMFDQNFEDKENSG 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36742187 36745597 - ClCG05G025310.1 Cla05g02538 274028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02538 628 MobiDBLite consensus disorder prediction 1 30 - -
Cla05g02538 628 CDD WD40 282 578 - -
Cla05g02538 628 ProSitePatterns Trp-Asp (WD) repeats signature. 306 320 IPR019775 -
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 448 - -
Cla05g02538 628 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Cla05g02538 628 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Cla05g02538 628 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 320 - -
Cla05g02538 628 MobiDBLite consensus disorder prediction 160 191 - -
Cla05g02538 628 Pfam WD domain, G-beta repeat 281 319 IPR001680 GO:0005515
Cla05g02538 628 Pfam WD domain, G-beta repeat 410 447 IPR001680 GO:0005515
Cla05g02538 628 Pfam WD domain, G-beta repeat 324 362 IPR001680 GO:0005515
Cla05g02538 628 Pfam WD domain, G-beta repeat 503 538 IPR001680 GO:0005515
Cla05g02538 628 MobiDBLite consensus disorder prediction 1 38 - -
Cla05g02538 628 SMART WD40_4 409 448 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 323 362 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 497 538 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 365 406 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 452 491 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 279 319 IPR001680 GO:0005515
Cla05g02538 628 SMART WD40_4 541 581 IPR001680 GO:0005515
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 448 IPR001680 GO:0005515
Cla05g02538 628 MobiDBLite consensus disorder prediction 229 266 - -
Cla05g02538 628 PANTHER PRE-MRNA-PROCESSING FACTOR 17 41 580 IPR032847 GO:0000398|GO:0071013
Cla05g02538 628 MobiDBLite consensus disorder prediction 229 261 - -
Cla05g02538 628 MobiDBLite consensus disorder prediction 160 177 - -
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 320 IPR001680 GO:0005515
Cla05g02538 628 Gene3D - 266 581 IPR015943 GO:0005515
Cla05g02538 628 SUPERFAMILY WD40 repeat-like 277 578 IPR036322 GO:0005515
Cla05g02538 628 Coils Coil 209 229 - -
Cla05g02538 628 Coils Coil 157 177 - -
Cla05g02538 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02538 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1160.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02538 Cla-Chr5:36742187 Cla10g00566 Cla-Chr10:8056511 1.08E-49 dispersed
Cla06g01206 Cla-Chr6:25243379 Cla05g02538 Cla-Chr5:36742187 2.37E-07 dispersed
Cla05g02538 Cla-Chr5:36742187 Cla09g00656 Cla-Chr9:6239084 4.37E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42