Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02540 ATGGCCCCAAGCTTTAAAAATTGTATGCTTATTTGCTGCTCTGCCAAGGTTTCGGAAGACATGGCGCAAGAGTCGTACGAGGAAGCAATTGCCGGACTCACAAAGCTTCTCAGTGAGAAAGCTGACCTTCAGGATGCCGCCGCCGCAAAGATCCGGCAAATAACCGCTGAATTGGCGGGGACCACTGCCGGTTCAAATGGCTTCGACCCGGTTGATAGGATCAGAACCGGGTTCACTCATTTCAAGAAATCCAAATTCGAGACGAATCCTGATTTGTATGGTCAACTTGCAAAAGGCCAAAGCCCTAAGTTTCTCGTATTTGCGTGTTCGGATTCCCGAGTTTGCCCTTCGCACATATTGAATTTTCAACCAGGGGAGGCCTTTGTGGTTCGTAACATCGCCAGCATGGTCCCACCATTTGACAAGACAAAATATTCTGGAGCGGGGGCTGCAATTGAATATGCTGTATTACATCTTAAGGTGGAGAATATAGTGGTGATTGGACATAGCTGCTGTGGGGGCATTAAAGGCCTCATGTCTATCCCAGACGATGGAACCGTTTCCAGTGATTTCATTGAGAATTGGGTGCAAATTTGCACACCTGCCAAAACCAAGACCCAATCAGCTTGCACCGACTTGAGTTTCGAGGACAAATGCACAAACTGCGAGAAGGAGGCTGTGAATGTTTCCCTTGGAAACTTGCTGTCATATCCTTTTGTAAGAGAAGCTGTTGTCAACAAGCAACTGTCCATAAGGGGTGCACATTACAACTTTGTCTCTGGAGCTTTTGAGCTTTGGAATCTTGACTTTAATATTTCACCTTCTCTAGCTGTTTAA 837 46.36 MAPSFKNCMLICCSAKVSEDMAQESYEEAIAGLTKLLSEKADLQDAAAAKIRQITAELAGTTAGSNGFDPVDRIRTGFTHFKKSKFETNPDLYGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIASMVPPFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTVSSDFIENWVQICTPAKTKTQSACTDLSFEDKCTNCEKEAVNVSLGNLLSYPFVREAVVNKQLSIRGAHYNFVSGAFELWNLDFNISPSLAV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36751591 36759394 - ClCG05G025330.2 Cla05g02540 274030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02540 278 CDD beta_CA_cladeB 77 266 IPR045066 GO:0004089|GO:0008270
Cla05g02540 278 Gene3D Carbonic anhydrase 62 278 IPR036874 GO:0004089|GO:0008270
Cla05g02540 278 PANTHER CARBONIC ANHYDRASE 21 278 - -
Cla05g02540 278 PANTHER CARBONIC ANHYDRASE 21 278 IPR001765 GO:0004089|GO:0008270
Cla05g02540 278 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 109 116 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cla05g02540 278 SMART Pro_CA_2 97 267 IPR001765 GO:0004089|GO:0008270
Cla05g02540 278 Pfam Carbonic anhydrase 105 262 IPR001765 GO:0004089|GO:0008270
Cla05g02540 278 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 153 173 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cla05g02540 278 SUPERFAMILY beta-carbonic anhydrase, cab 70 273 IPR036874 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02540 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101215090 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01167 Cla-Chr8:24538144 Cla05g02540 Cla-Chr5:36751591 1.73E-50 transposed
Cla10g00920 Cla-Chr10:21884129 Cla05g02540 Cla-Chr5:36751591 5.29E-35 transposed
Cla10g01352 Cla-Chr10:28564085 Cla05g02540 Cla-Chr5:36751591 7.59E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g705 . . Bda01g02222 Bda11g01265 Bpe13g00496 . . . . Cmo18g00804 . Cma18g00800 . Car18g00731 Sed08g1391 Cpe09g00503 Cpe01g01530 Bhi07g01727 Tan04g1231 Cmetu04g2853 Lac13g0202 Hepe10g1642 . . Cla05g02540 Cam05g2730 Cec05g2761 Cco05g2801 Clacu05g2731 Cmu05g2584 Cre05g2698 Cone13ag1039 Cone19ag1029 Cone8ag0661 Cone12ag0642 Lsi04g00548 Csa05g02338 Chy10g00905 Cme10g00521 . . . Bda11g01265 . . Bma01g00049 Bma06g00622 . . . Cma04g01731 . Car04g01764 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003345 2 3 1 2 2 1 2 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 1 1 6 1 4 48