Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02542 ATGGTTCACATGGCATCTTTCAGTTCTTATCGTTTCTCCCAAGATTTGGGCAAAAGTAATCTTCCTTACATTCTGCATCTTCTCTCTCCCCATCTATTCCCTCTTTCTTTTGAATCATCGCATGATTTTTGTTTCTGCCATTGCTGTAATCTTGAAACAACCTTCTTGTTTGTTGTTGTTTTTCTCTTTCTTTTATTCATTGGCCGTGAAGATGCAAATAACAGTGCATTGCAAGAGGAAGAGGAGGAGGATTGCGAGAGAAGAAGAATAATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTATAGCTCCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCCCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCACCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTCTGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACTACAAAAGCATCTTCGACACCTCCAGGAAGCCCACCTTCTCCAATATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGGGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCGCCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAAGGCACCATCGTCTGGTTCAAGTAGTCAAACCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGGACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCGGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCCGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACTCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATTTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTGGTCGACAATTCTAA 2604 47.31 MVHMASFSSYRFSQDLGKSNLPYILHLLSPHLFPLSFESSHDFCFCHCCNLETTFLFVVVFLFLLFIGREDANNSALQEEEEEDCERRRIMSSSNDTSSPSSDSISDSSLPPEALDSSSSPPPPPPPSPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATIAPPIDDLVSPSSSPPAPPDPGTTPPAPTGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSLVGVVNPPPTPVPTTKASSTPPGSPPSPISEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPGPPQGIATPTSESNILSPPTTTFTSTSTRTPNNSPHFADSTPVKSPLGQSKAPSSGSSSQTDVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSGRQF 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36770135 36773591 + ClCG05G025350.2 Cla05g02542 274032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02542 867 Pfam Protein tyrosine and serine/threonine kinase 501 710 IPR001245 GO:0004672|GO:0006468
Cla05g02542 867 SUPERFAMILY Protein kinase-like (PK-like) 479 772 IPR011009 -
Cla05g02542 867 MobiDBLite consensus disorder prediction 190 206 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 324 380 - -
Cla05g02542 867 SMART serkin_6 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02542 867 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Cla05g02542 867 Gene3D Transferase(Phosphotransferase) domain 1 574 786 - -
Cla05g02542 867 Gene3D Phosphorylase Kinase; domain 1 467 573 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 207 268 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 116 138 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 92 115 - -
Cla05g02542 867 ProSiteProfiles Protein kinase domain profile. 498 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02542 867 MobiDBLite consensus disorder prediction 74 380 - -
Cla05g02542 867 CDD STKc_IRAK 504 773 - -
Cla05g02542 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Cla05g02542 867 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 203 839 - -
Cla05g02542 867 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 203 839 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 838 867 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 172 189 - -
Cla05g02542 867 MobiDBLite consensus disorder prediction 286 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02353 Cla-Chr5:35102124 Cla05g02542 Cla-Chr5:36770135 5.54E-167 dispersed
Cla05g02542 Cla-Chr5:36770135 Cla06g00852 Cla-Chr6:12743205 4.54E-159 dispersed
Cla05g02542 Cla-Chr5:36770135 Cla11g00221 Cla-Chr11:2548037 4.66E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80598 PF07714 PK_Tyr_Ser-Thr 2.80E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02542 - - csv:101215732 1061.98