Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02542 | ATGGTTCACATGGCATCTTTCAGTTCTTATCGTTTCTCCCAAGATTTGGGCAAAAGTAATCTTCCTTACATTCTGCATCTTCTCTCTCCCCATCTATTCCCTCTTTCTTTTGAATCATCGCATGATTTTTGTTTCTGCCATTGCTGTAATCTTGAAACAACCTTCTTGTTTGTTGTTGTTTTTCTCTTTCTTTTATTCATTGGCCGTGAAGATGCAAATAACAGTGCATTGCAAGAGGAAGAGGAGGAGGATTGCGAGAGAAGAAGAATAATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTATAGCTCCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCCCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCACCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTCTGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACTACAAAAGCATCTTCGACACCTCCAGGAAGCCCACCTTCTCCAATATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGGGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCGCCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAAGGCACCATCGTCTGGTTCAAGTAGTCAAACCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGGACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCGGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCCGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACTCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATTTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTGGTCGACAATTCTAA | 2604 | 47.31 | MVHMASFSSYRFSQDLGKSNLPYILHLLSPHLFPLSFESSHDFCFCHCCNLETTFLFVVVFLFLLFIGREDANNSALQEEEEEDCERRRIMSSSNDTSSPSSDSISDSSLPPEALDSSSSPPPPPPPSPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATIAPPIDDLVSPSSSPPAPPDPGTTPPAPTGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSLVGVVNPPPTPVPTTKASSTPPGSPPSPISEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPGPPQGIATPTSESNILSPPTTTFTSTSTRTPNNSPHFADSTPVKSPLGQSKAPSSGSSSQTDVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSGRQF | 867 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36770135 | 36773591 | + | ClCG05G025350.2 | Cla05g02542 | 274032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02542 | 867 | Pfam | Protein tyrosine and serine/threonine kinase | 501 | 710 | IPR001245 | GO:0004672|GO:0006468 | |
Cla05g02542 | 867 | SUPERFAMILY | Protein kinase-like (PK-like) | 479 | 772 | IPR011009 | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 190 | 206 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 324 | 380 | - | - | |
Cla05g02542 | 867 | SMART | serkin_6 | 498 | 772 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g02542 | 867 | ProSitePatterns | Protein kinases ATP-binding region signature. | 504 | 526 | IPR017441 | GO:0005524 | |
Cla05g02542 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 574 | 786 | - | - | |
Cla05g02542 | 867 | Gene3D | Phosphorylase Kinase; domain 1 | 467 | 573 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 207 | 268 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 116 | 138 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 92 | 115 | - | - | |
Cla05g02542 | 867 | ProSiteProfiles | Protein kinase domain profile. | 498 | 778 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 74 | 380 | - | - | |
Cla05g02542 | 867 | CDD | STKc_IRAK | 504 | 773 | - | - | |
Cla05g02542 | 867 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 619 | 631 | IPR008271 | GO:0004672|GO:0006468 | |
Cla05g02542 | 867 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 203 | 839 | - | - | |
Cla05g02542 | 867 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED | 203 | 839 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 838 | 867 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 172 | 189 | - | - | |
Cla05g02542 | 867 | MobiDBLite | consensus disorder prediction | 286 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02353 | Cla-Chr5:35102124 | Cla05g02542 | Cla-Chr5:36770135 | 5.54E-167 | dispersed | |
Cla05g02542 | Cla-Chr5:36770135 | Cla06g00852 | Cla-Chr6:12743205 | 4.54E-159 | dispersed | |
Cla05g02542 | Cla-Chr5:36770135 | Cla11g00221 | Cla-Chr11:2548037 | 4.66E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80598 | PF07714 | PK_Tyr_Ser-Thr | 2.80E-44 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02542 | - | - | csv:101215732 | 1061.98 |