Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02547 ATGGGGCTTACGTTCACAAAGCTTTTCAGTCGGCTTTTTGCAAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCAGCTGGTAAGACAACTATCCTCTACAAGCTCAAGCTTGGCGAGATCGTCACAACAATCCCTACCATCGGGTTTAATGTTGAGACTGTAGAGTACAAAAACATCAGCTTCACGGTCTGGGATGTTGGGGGTCAAGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATATTTGTTGTTGATAGCAATGACAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTTCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACCGACAAGCTTGGTCTCCACTCTCTCCGCCAGCGTCACTGGTACATCCAGAGCACATGCGCCACCTCTGGAGAGGGACTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCAACACTTTATATCAATGGTGCATCAACATTTAGAAGTGTAATCTTGTTTTTCCCTAACACTTCCTCCAATAAGGGGAGAAAGGAGGAAAGCTCTACTATTGACATCTCTCTTCGTATGCTCCTATTGTATGCAGGCATAAGGATATGGAACATTTGA 699 45.06 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKATLYINGASTFRSVILFFPNTSSNKGRKEESSTIDISLRMLLLYAGIRIWNI 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36795739 36797828 - ClCG05G025400.1 Cla05g02547 274037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02547 232 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
Cla05g02547 232 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Cla05g02547 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Cla05g02547 232 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 Gene3D - 5 185 IPR027417 -
Cla05g02547 232 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Cla05g02547 232 SMART arf_sub_2 1 181 - -
Cla05g02547 232 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Cla05g02547 232 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Cla05g02547 232 SMART rab_sub_5 18 180 - -
Cla05g02547 232 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02547 K07937 ARF1_2; ADP-ribosylation factor 1/2 - han:110920993 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00500 Cla-Chr1:5360352 Cla05g02547 Cla-Chr5:36795739 2.77E-73 dispersed
Cla01g01671 Cla-Chr1:31599812 Cla05g02547 Cla-Chr5:36795739 9.96E-96 dispersed
Cla05g02547 Cla-Chr5:36795739 Cla09g00448 Cla-Chr9:4259230 2.83E-133 dispersed
Cla05g00498 Cla-Chr5:4559836 Cla05g02547 Cla-Chr5:36795739 4.53E-63 transposed
Cla05g00868 Cla-Chr5:8603474 Cla05g02547 Cla-Chr5:36795739 7.86E-30 transposed
Cla01g00438 Cla-Chr1:4767282 Cla05g02547 Cla-Chr5:36795739 1.29E-18 transposed
Cla01g00862 Cla-Chr1:10703091 Cla05g02547 Cla-Chr5:36795739 7.63E-30 transposed
Cla10g01341 Cla-Chr10:28403263 Cla05g02547 Cla-Chr5:36795739 6.33E-112 wgd
Cla05g02547 Cla-Chr5:36795739 Cla08g01759 Cla-Chr8:30038469 3.91E-131 wgd
Cla05g02547 Cla-Chr5:36795739 Cla09g01865 Cla-Chr9:36357727 2.62E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297