Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02553 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA 510 43.53 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36831702 36832772 - ClCG05G025460.1 Cla05g02553 274043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02553 169 CDD HMG-box 119 165 - -
Cla05g02553 169 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Cla05g02553 169 SUPERFAMILY HMG-box 104 160 IPR036910 -
Cla05g02553 169 Gene3D High mobility group box domain 109 169 IPR036910 -
Cla05g02553 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 117 169 IPR009071 -
Cla05g02553 169 PANTHER AXIAL REGULATOR YABBY 4 1 167 - -
Cla05g02553 169 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02553 Cla-Chr5:36831702 Cla11g00285 Cla-Chr11:3276437 8.70E-40 dispersed
Cla05g02553 Cla-Chr5:36831702 Cla08g01746 Cla-Chr8:29943203 4.15E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61192 PF04690 YABBY 5.20E-58 CL0114 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02553 K25796 - csv:101211641 316.235