Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02555 ATGGCAAGAATCCCATCATTGCCAGGCCTCAACCTATTCTCTTCACTCCCTTCACCTCCACCGCCTCACGATCCCTCACCCACTTCTTCTCCTTCAACACCCATTCCAATTCCCAAATACCCTCCTCCCAAATCCCGCACCCTTCGGACCAACAATCCTCCCAAACCCCCTAATCCTGCTCTCAAAACCTTCCACCGCCGCTCCAATTACTACAAGCCCGTCAAAGATGGAGTCATCTCATCCCACGGCGATCGCTCCGTCGTCATCGGCGATTCCGGTGTGTCGTATCTCCTCCCCGATGCTCCATTCGAGTTCCAATACAGTTACTCTGAGACCCCCAAAGTCAAGCCCATTGCAATTCGCGAACCAGCGTTTCTACCCTTTGCACCCCCGACGATGCCGAGGCCATGGACCGGCAAAGCTCCATTGAAGAGCTCGAAGAAGAAAATCCCTCTCTTCGATTCCTTCAATCCGCCCCCTCCTGGTACCAACGGAGTTAAGCAAGTCCAGATGCCTGGCCCGTTCCCGCTTGGCCAGTTTCCCAAGGAGGGGAAAAGCAGAGAGGAGATTCTTGGGGAACCCCTTAAGAATTGGGAGATTCGCATGCTGGTGAAACCCCATTTGTCACATAATCGCCAGGTTAATCTTGGAAGGGATGGACTTACGCATAATATGTTGGAACTGATACATTCGCATTGGAAGCGGCAACGTGTCTGTAAAGTTCGTTGCAAAGGTGTTCCCACAGTAGATATGGATAATATCTGCCATCATATCGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTTGGTGGTGTATTATATCTATTCCGAGGTAGAAACTACAATTATCGTACTCGCCCTCAATACCCTGTAATGCTCTGGAAACCTGCAGCTCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGGTTAACAAAAGAGGAAGCTAATGTTCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGACATGAAAGTGAGTTTCTTTTCTTTAATTAGAGTGGTTATAAGTAGAAGTTCTTCAATTTCATATTTCTATCTTCTGAAGATATTTTTCTCAAATTTCCTGATTTACTTGAGGGCCAACTTTGAAAGTGAGATAATTTATATAGTGTTTTATGTGATAGAGGCAATGTCAGTCTTTTGCGAATATGTAAATTTATATTATTGTACTAACTCATCTTTAAACTACTACAATTCAAATATTTACTGTAATTGCTTATTATTTATTCAAAGAGGACACATCATATTCCCCTTGTTAAGTACTGAGTTTAATTTATCTCCCTTTGCAGCAAAAAATGGTGTGTACATTTCCTTAGTGGATGACGTGAGGCATGCTTTTGAAGGAAGCATTTTGGTGAAGATTGATTGCACTGGCATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTGAAGGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAAGTTATTTCAGACGATCGTTCTGCTCCACTTCCTACTCGGGTTAGCTCAAATGATTGTTTGGGTTCATCTGGCGAGTCTATTGAGAATGGTGTCCTCTTACAAGGCAATCATCATACTATCAAAACTAGCCCGAAAATGAAGCTGCTATGGGAGCGTGCCATCGATTCAAACAAGGCATTGTTGCTAGATGAGATTGGTCTTGCTCCTGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAGCACTCTTATCCAGCATTTATCATGTCAAGTGAAGATGTCAGCAACCCAGTTGACAGCCCTGGAAGTCGGGATCAAAGTGAAGGTAACTACAACTCCGATGACGATGTAGGTTGGGAAGGCGACCTTTTTGATAATGTTGACCCGTCAGTCCCTTTAGGATCATTACCTGTTGATATTATAGCAAAGAAGCTGAGCCCTGAATAG 1992 43.22 MARIPSLPGLNLFSSLPSPPPPHDPSPTSSPSTPIPIPKYPPPKSRTLRTNNPPKPPNPALKTFHRRSNYYKPVKDGVISSHGDRSVVIGDSGVSYLLPDAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTNGVKQVQMPGPFPLGQFPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANVLRMKGKNLLPICKLDMKVSFFSLIRVVISRSSSISYFYLLKIFFSNFLIYLRANFESEIIYIVFYVIEAMSVFCEYVNLYYCTNSSLNYYNSNIYCNCLLFIQRGHIIFPLLSTEFNLSPFAAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKVISDDRSAPLPTRVSSNDCLGSSGESIENGVLLQGNHHTIKTSPKMKLLWERAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFIMSSEDVSNPVDSPGSRDQSEGNYNSDDDVGWEGDLFDNVDPSVPLGSLPVDIIAKKLSPE 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36841062 36845314 + ClCG05G025480.2 Cla05g02555 274045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02555 663 MobiDBLite consensus disorder prediction 1 67 - -
Cla05g02555 663 ProSiteProfiles CRM domain profile. 417 515 IPR001890 GO:0003723
Cla05g02555 663 SMART CRS1_YhbY_2 432 504 IPR001890 GO:0003723
Cla05g02555 663 SMART CRS1_YhbY_2 195 278 IPR001890 GO:0003723
Cla05g02555 663 SUPERFAMILY YhbY-like 442 509 IPR035920 -
Cla05g02555 663 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 1 348 - -
Cla05g02555 663 MobiDBLite consensus disorder prediction 606 623 - -
Cla05g02555 663 Pfam CRS1 / YhbY (CRM) domain 196 278 IPR001890 GO:0003723
Cla05g02555 663 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 443 661 - -
Cla05g02555 663 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 443 661 IPR044599 GO:0000373
Cla05g02555 663 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 1 348 IPR044599 GO:0000373
Cla05g02555 663 Gene3D - 194 290 IPR035920 -
Cla05g02555 663 SUPERFAMILY YhbY-like 194 287 IPR035920 -
Cla05g02555 663 ProSiteProfiles CRM domain profile. 193 289 IPR001890 GO:0003723
Cla05g02555 663 Gene3D - 441 515 IPR035920 -
Cla05g02555 663 MobiDBLite consensus disorder prediction 14 60 - -
Cla05g02555 663 MobiDBLite consensus disorder prediction 606 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02555 - - - cmo:103488994 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02555 Cla-Chr5:36841062 Cla11g00206 Cla-Chr11:2406330 4.21E-22 dispersed
Cla05g02555 Cla-Chr5:36841062 Cla06g01466 Cla-Chr6:28204565 4.67E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35