Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02558 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCAGAAGCGGAAGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCCACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTTACCCACGCACTTAGTCACTCCCAGCTGTGTAAAGTGGTATACGAAAAGGGTGGTCATTTAATTCACCATCAACTAACAACTACCATGTGCTTTGTTCCTGGCTATGGCTGGGCATTACCCAGGAATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGACAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAAGATGCAATAGAGGCTGTTGGCAAGTTGGGGCTTGGGGTAGCTTTAGCCGATACCTGTATTCGGGTTTTAAAATAG 1158 46.72 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSVFAAKVLLVPSLTHALSHSQLCKVVYEKGGHLIHHQLTTTMCFVPGYGWALPRNDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQDAIEAVGKLGLGVALADTCIRVLK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36873530 36881144 + ClCG05G025510.2 Cla05g02558 274048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02558 385 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cla05g02558 385 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cla05g02558 385 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cla05g02558 385 Pfam Homeobox KN domain 313 352 IPR008422 GO:0003677|GO:0006355
Cla05g02558 385 SUPERFAMILY Homeodomain-like 294 359 IPR009057 -
Cla05g02558 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 243 360 - -
Cla05g02558 385 SMART HOX_1 295 360 IPR001356 GO:0003677
Cla05g02558 385 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Cla05g02558 385 Gene3D - 292 365 - -
Cla05g02558 385 CDD homeodomain 305 357 IPR001356 GO:0003677
Cla05g02558 385 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 243 360 - -
Cla05g02558 385 ProSiteProfiles 'Homeobox' domain profile. 293 356 IPR001356 GO:0003677
Cla05g02558 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 186 - -
Cla05g02558 385 SMART ELK_2 273 294 IPR005539 GO:0003677
Cla05g02558 385 Pfam ELK domain 273 294 IPR005539 GO:0003677
Cla05g02558 385 ProSiteProfiles ELK domain profile. 273 293 IPR005539 GO:0003677
Cla05g02558 385 ProSitePatterns 'Homeobox' domain signature. 331 354 IPR017970 GO:0000981|GO:0006355
Cla05g02558 385 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02117 Cla-Chr1:35437912 Cla05g02558 Cla-Chr5:36873530 8.52E-64 dispersed
Cla05g01810 Cla-Chr5:30014939 Cla05g02558 Cla-Chr5:36873530 1.91E-71 dispersed
Cla05g02558 Cla-Chr5:36873530 Cla08g01650 Cla-Chr8:29144261 2.65E-29 dispersed
Cla02g01473 Cla-Chr2:29270434 Cla05g02558 Cla-Chr5:36873530 3.12E-73 transposed
Cla05g02558 Cla-Chr5:36873530 Cla06g01668 Cla-Chr6:30261499 1.67E-12 wgd
Cla05g02558 Cla-Chr5:36873530 Cla08g01740 Cla-Chr8:29881590 1.14E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61193 PF03791 KNOX2 6.70E-24 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02558 - - csv:101211876 553.903