Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02559 ATGAAACCCTACAACTTCTCCTTTGCAATTCTCTTCCTTCTAATACTCTTGTTATTTCGTTTTCTAATCCAATCGGCGGCTGATTCCAGAGCTACTCAGGCGGCTCTCATATGTTCCAACAACACTGCTTCGCTGCCGGAGCGATCGACCTTTGTGTCGAATTTCTTGGACTCTATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAGCCGTTGTGAATGGGACTGGAAATACGTCTGTTTATGCTTTTGGAGAGTGTATGAACGATCTTACTCAATCGGATTGTGATCTCTGTTTTGCCCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGAGGGGGCAGACTTTTCTATGACGGGTGTTATGTTAGGTATGATTATTATAACTTCTTTAACGAATCCTTGAGTGCTGTGGATAGGACTGTATGTGGGAAATCGGATTACAGTGGGAATCGGACTATTTTTAGTGACAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTAGCGCCCAAGAACGATGGGTTTGCTGTGGGATTGGTGAATTTGAGAAATGTGTCCGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAAAGGGACTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGACATTGGTTCTTGTCCTCCAAAAACTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCGCTACTGGAGGAAATGTATCTGCTGCTGTGGCTGCTGCATTGATTATTTCAACGGTTGTTTTCTGTGCCAGAAGGAGAGTAGTCAGGAAACGCAAAGAGAAAAAGCAACTCGGTCCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCATATGAGACTCTTGAGAGGGCCACAAATTACTTTGACCAATCCAATAAACTAGGACAAGGAGGTTCTGGTTCAGTTTATAAGGGAACCCTATCAGATGGCAGAGTTGTAGCAATTAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGACCATTTCTTTAATGAAGTAAATCTTATTAGCGGCATCCGACACAAAAATCTTGTAGGGCTGCTGGGATGCAGCATTACAGGCCCTGAAAGCCTCCTTGTTTATGAATACGTGCCAAATCAGAGCTTGCACGATTACCTGTTTGGTAACAAGAATGTCCAGCCACTGAGTTGGGAATCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCATGAGGAGTCAAATGTGAAAATCATTCATCGCGACATAAAACTAAGCAATATTCTGCTGGATAATGATTTCACTCCGAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCCGAAGATAAGACACACATTAGTACCGCAATTGCTGGCACACTAGGTTACATGGCTCCTGAATATGTAGTGCGTGGCAAGTTGTCTGAAAAGGCCGATGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTCATCACTGGAAGGAGGAATAATCACTTCTATCAAGATTCAACGTCCATCTTACAAAAGGTGAAAGCTTATATCCATTACACCGTATGGAATTTGTATGGAGAGGGAAAGCTATATGCAGCTGTCGATCCTATATTAGCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGCGTGCAAGCCTTTGCTGATCTAAGGCCATCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTACGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAACTACCCCAAGCCCCAACTTGCCAACAGCCTCTATTGCATCTCTGTCAAGTACACCATCGAAAAATAAGGAAGACGACATTTTTATGACCCGAGTATCTGAGGAACTATGCCAATCAAGTTTTACAATATAA 1965 42.85 MKPYNFSFAILFLLILLLFRFLIQSAADSRATQAALICSNNTASLPERSTFVSNFLDSMDAVTPLIASQRFAAVVNGTGNTSVYAFGECMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSAVDRTVCGKSDYSGNRTIFSDNAMKLARNLSVVAPKNDGFAVGLVNLRNVSVYGLGQCWKFVKGTSCSKCLVDAAKDIGSCPPKTEGRVLNAGCYFRYSTERFYFNSTATATGGNVSAAVAAALIISTVVFCARRRVVRKRKEKKQLGPLVAIVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNNHFYQDSTSILQKVKAYIHYTVWNLYGEGKLYAAVDPILAGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSTTPSPNLPTASIASLSSTPSKNKEDDIFMTRVSEELCQSSFTI 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36880979 36884914 - ClCG05G025520.1 Cla05g02559 274049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02559 654 MobiDBLite consensus disorder prediction 603 634 - -
Cla05g02559 654 SMART serkin_6 317 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02559 654 MobiDBLite consensus disorder prediction 614 634 - -
Cla05g02559 654 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 612 - -
Cla05g02559 654 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Cla05g02559 654 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Cla05g02559 654 SUPERFAMILY Protein kinase-like (PK-like) 303 624 IPR011009 -
Cla05g02559 654 Gene3D - 144 247 IPR038408 -
Cla05g02559 654 Gene3D - 31 138 IPR038408 -
Cla05g02559 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 612 - -
Cla05g02559 654 CDD STKc_IRAK 323 594 - -
Cla05g02559 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Cla05g02559 654 ProSiteProfiles Protein kinase domain profile. 317 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02559 654 Gene3D Phosphorylase Kinase; domain 1 277 392 - -
Cla05g02559 654 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Cla05g02559 654 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Cla05g02559 654 ProSiteProfiles Gnk2-homologous domain profile. 144 247 IPR002902 -
Cla05g02559 654 Gene3D Transferase(Phosphotransferase) domain 1 393 603 - -
Cla05g02559 654 Pfam Protein kinase domain 318 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01076 Cla-Chr3:21194294 Cla05g02559 Cla-Chr5:36880979 8.23E-56 dispersed
Cla05g02559 Cla-Chr5:36880979 Cla09g02204 Cla-Chr9:39646954 2.06E-90 dispersed
Cla10g01334 Cla-Chr10:28305246 Cla05g02559 Cla-Chr5:36880979 0 wgd
Cla05g02559 Cla-Chr5:36880979 Cla08g01738 Cla-Chr8:29872343 2.04E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80599 PF00069 Pkinase 1.40E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02559 - - cmo:103488990 1089.33