Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02561 ATGGAGGTCGACGGCGGAGCTACGGCGGCGGCTCAGCCGAGGAAATTCTCTCTCCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCGCCGCACATGCGAACGTTTCATCTCTCGTGGATTTCCTTCTGCGCTTGTTTCATTTCCAGTTTCGCGGCGGCTCCTCTGCTTCCGGTGATCCGCGACAACCTCGACTTAACCGACACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCCGGCGCCGTCTTCGCCCGAATCATGATGGGTTCCGCCTGCGACTTGGTCGGACCACGTCTCGCCTCCGCTTCACTCATTCTCATAACCTCACCGGCGGTTTATTTAACCTCCATAGCTTCATCCCCTGTTTCGTTTCTCCTTGTCCGATTCTTCACCGGCTTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGTTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAACGGTGTCGCCGGCGGCTGGGGGAACCTAGGCGGCGGCGCAACACAGTTAATCATGCCGTATGTTTTCGCCATCATCGAACACATCGGCGCAACGAAATTCACCGCATGGAGAATCGCTTTCTTCATCCCAGCGTTATTCCAAACGCTTTCCGCCTTCGCCGTTCTCCTCCTGGGCGAGGACACTCCAGACGGGAATTTCCGGCGGCTGCAGAAAACAGGGGAGAAGGCGAAAGACGAATTATCGAAAGTTGTGTTGAATGGGGTGAAGAATTACAGGGGATGGATTCTGGCATTGACTTATGGGTATAGTTTCGGAGTGGAATTGACGATTGATAATGTAATAGCGAATTACTTTTACGATAGGTTTAATTTGAATCTGCACACGGCGGGGATAGTGGCGGCGAGTTTTGGGCTGGCGAATCTGTTTTCGAGGCCTTACGGCGGAGTATTGTCGGATGTGGTGGGGAAAAGATTTGGAATGAGAGGGAGGCTGTGGGCTTTGTGGTTGGTGCAAACAATTGGGGGAATTTTGTGTGTGATTCTTGGGTTGGTTAATTCTTTGAGTGCTTCGATTACCATTATGATCGTTTTTTCAGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTTGTTCCTTTCGTCTCTCGAAGGTCATTAGGAGTAATATCGGGGATGACAGGTGGGGGCGGGAATGTGGGGTCGGTGCTGACTCAGCTGATATTCTTCAGAGGCAACAGATACACAAAAGAGAGAGGAATAAGTCTAATGGGAGTGATGATAATAGCTTGCACTCTCCCAATTGCATTGATTTATTTTCCTCAATGGGGCAGTATGTTCTTTGGGCCTTCCTCCAAAATTGCTTCTGAGGAAGACTATTACTTGTCGGAATGGACTTCTGAGGAGAAGGCCAAAGGCTTCCATATGGCTAGCCTTAAGTTTGCTGAGAATAGTCGAACTGAAAGAGGCAAAAACCTTAAGGGAACTGCTGATGCTGATCTTGCCTCCCCTAATGTTTAA 1515 50.3 MEVDGGATAAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLDLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFRRLQKTGEKAKDELSKVVLNGVKNYRGWILALTYGYSFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVGKRFGMRGRLWALWLVQTIGGILCVILGLVNSLSASITIMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGNRYTKERGISLMGVMIIACTLPIALIYFPQWGSMFFGPSSKIASEEDYYLSEWTSEEKAKGFHMASLKFAENSRTERGKNLKGTADADLASPNV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36898918 36901299 - ClCG05G025540.1 Cla05g02561 274051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02561 504 Pfam Major Facilitator Superfamily 46 402 IPR011701 GO:0022857|GO:0055085
Cla05g02561 504 Gene3D MFS general substrate transporter like domains 240 443 IPR036259 -
Cla05g02561 504 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 1 491 - -
Cla05g02561 504 SUPERFAMILY MFS general substrate transporter 36 438 IPR036259 -
Cla05g02561 504 CDD MFS_NRT2_like 42 435 IPR044772 GO:0015112
Cla05g02561 504 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 491 IPR044772 GO:0015112
Cla05g02561 504 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 442 IPR020846 GO:0022857
Cla05g02561 504 Gene3D MFS general substrate transporter like domains 35 231 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00254 Cla-Chr3:3023963 Cla05g02561 Cla-Chr5:36898918 0 dispersed
Cla03g00255 Cla-Chr3:3036860 Cla05g02561 Cla-Chr5:36898918 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02561 K02575 - csv:101212365 859.366