Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02598 ATGTATCACGGACTTGGCGCTAACCGCCTCGTCTTTCGAGCCAGTATCACCAAGTGCGTCAAGGTTGGTATAATTGATGAAGCCATACGGATATTCGATGAAATGACTCAATCCAATTGCACTGTAACTAGCAGAGACTACAATCGCTTCATTGGTGTTTTAATTAGCCGCTCACGTTTCGATTTGGCCGAAAGCTATTACTCGAGAATGATACCACAAGGTTTTTCTCTTACTCCATTTACTTACTCCAGGTTCATTTCTGCTTTATGTGAAATTAAGAATTTCGGGCTCATAGGAAGGCTCTTAGAAGATATGCATAAACTTGGCTATCTTCCTGACATTTGGGCATTTAATATATATTTGAATCTCTTATTCCGCGAGAACTTTTTAGAATTAGCTCTAGAATTTTTTGACGAAATGGTTGCGAAAGGAAGGGAACCTGATGTTGTAACATACACTATAATAGTCGATAGATTGTGCAAAGCCAAACAATATGACAAAGCTGTCGAGTTTTGGCGTTGTATGGTTAATAAGGGGCTTACTCCGGACATGAAAGCCTGTACAGCCCTCGTTGTTGGGCTCTGCGATGGTGGGAAGGTTGATTTAGCCTACGAGCTTACGGTTGGTGAAATGAAGGGTCAGATGAAGTTCAACAACTTGATTTTTAATTCTCTGATGAGCGGGTTTTGTAAGGTTGGCCGGATCTCCAAGGCACTGGCCATCAAATCATTTATGAGTAAAAGTGGTTGCGAGCCGGATTTGGTTACTTATAATATTTTGCTGAACTTTTTTTGCGATGGGCTGATGTTAGAGGTGGCCGGAAAGTCTATGAAAAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTATAGTTACAATCAACTTCTTAAAGGTCTTTGCAAAGCTAATAGGCTGGATAAGGCATATAAATTGATGAATAAAATGTGGGCAAAAGGTTTGTGTGATACCGTTTCATACAATACCGTGATAGGTGCATTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTGTTTGAGGAAATGGGCCAGAAAGGTGTCGCTCCAGACGTGGGAACATTTGCCACTCTTATAAAAGCATTTCTTAAAGAAGGCAGCTCCCATATTGCGAAGAGACTTCTTCAAAAAATGACAGAGACAGTTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGTAAGACAGGGAACATTGAGATGGCGCAAGGCGTCTTCCGTGACATGATAGAGATAGGAATTGCCCCTGATGTGGTTTCATATAATGCGCTTATAAATGGGCTTTGCAAGGCCTTCAAAGTTAGTGAGGCCATGTTACTGTATGAGGAAATGCAAATTAGAGGATGCTATCCTGACGAGGTAACTTTCAAACTGATAATTGGAGGACTTTTACGAGAAAAGAAACTTTCTTTAGCTTGTCAGGTCTGGGATCAGATGATGGAGAAGGGCTATACACTTGACAGATTCGTATCTAAGACTCTCATTAATGCCATTCAGTCAAGGGATGCTGAGGCGTTGGGCTATAATTGTACCACAGACATAGAGTGTTTAAATTCCTTCCACCATCCACCCCATCTTGGGGCTGGTGATCATTTCAGAAGTCAGGTCGGGGAAGCCTTGCCTGGCATCAAAACCACGGGGATCGAGGACTGTACTTCACCATTACATTGA 1701 41.74 MYHGLGANRLVFRASITKCVKVGIIDEAIRIFDEMTQSNCTVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMHKLGYLPDIWAFNIYLNLLFRENFLELALEFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLTPDMKACTALVVGLCDGGKVDLAYELTVGEMKGQMKFNNLIFNSLMSGFCKVGRISKALAIKSFMSKSGCEPDLVTYNILLNFFCDGLMLEVAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNKMWAKGLCDTVSYNTVIGALCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLKEGSSHIAKRLLQKMTETVLLPDHIFYTTVIDYLCKTGNIEMAQGVFRDMIEIGIAPDVVSYNALINGLCKAFKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLREKKLSLACQVWDQMMEKGYTLDRFVSKTLINAIQSRDAEALGYNCTTDIECLNSFHHPPHLGAGDHFRSQVGEALPGIKTTGIEDCTSPLH 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37231395 37235116 + ClCG05G025900.1 Cla05g02598 274088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cla05g02598 566 Pfam PPR repeat 16 40 IPR002885 -
Cla05g02598 566 Pfam PPR repeat 396 424 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 290 320 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 429 463 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 150 183 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 116 149 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Cla05g02598 566 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cla05g02598 566 Pfam PPR repeat 284 315 IPR002885 -
Cla05g02598 566 Gene3D Tetratricopeptide repeat domain 409 518 IPR011990 GO:0005515
Cla05g02598 566 Gene3D Tetratricopeptide repeat domain 322 408 IPR011990 GO:0005515
Cla05g02598 566 Gene3D Tetratricopeptide repeat domain 2 96 IPR011990 GO:0005515
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Cla05g02598 566 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Cla05g02598 566 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cla05g02598 566 Gene3D Tetratricopeptide repeat domain 211 321 IPR011990 GO:0005515
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cla05g02598 566 Pfam PPR repeat family 221 265 IPR002885 -
Cla05g02598 566 Pfam PPR repeat family 426 474 IPR002885 -
Cla05g02598 566 Pfam PPR repeat family 112 161 IPR002885 -
Cla05g02598 566 Pfam PPR repeat family 322 369 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Cla05g02598 566 Gene3D Tetratricopeptide repeat domain 97 210 IPR011990 GO:0005515
Cla05g02598 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02598 - - - csv:101214780 946.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02598 Cla-Chr5:37231395 Cla01g01051 Cla-Chr1:16255390 3.15E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30