Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02610 ATGAATATACACCTCTCTCTCTTACAAAAACCTTTCATATCAAAGAAAAAAGAAATGGTTAGCCTTGATCAGATTATACATAGTATCGTTATCATGTGGTTTCCTCTAACAATGGTGCTATTATCTTCTCTACTGTTTCTTAAAACAAAGATGAAATTTGGAAGACACAATAACAAGAATGTTATTGTTCCTCCTCCAAGTCCACCAAAGCTTCCTTTGTTAGGTCATTTACACCTCATTACCTCTCTCCCACATCGCTCTTTTTTTAACCTTTCAAAAAAATATGGCCCCGTCATCCTCCTCAAACTCGTCTCCATCCCGACCGTCGTAGTCTCCTCCGCCGATGCTGCAAAAGAGGTGCTAAAACTTCATGACCTTGCTTCTTGCAGCCGACCTCAATCCGCCGCTGGAGCAAGATTTTCATACAATTATCTAGACATTGGGTTAGCGCCATATGGTGACCATTGGAGGGAAGTTAGAAAAATTTGTGTGCTTGAGCTGTTCAGTGCTAGAAGAGTGCAATCATTTCAAATGATAAGAGAAGAAGAGATTGGTGTGCTGTTGAACTCCATTTCTCAATCTTCATCTTTTGCCACTCCAATTGATTTGAGTGAGAAATTGTACTCTCTCACTGCAAATATGATAGCTCGAATTGCTTTTGGGAAGTGCTTTAGAGGAAGTGAGTTAGAAAATAAGAATTTTCAAAAGGTTATTCGAGGAGGACTTGTAGCATTGGGAAGCTTTTCAGCCACTGACTTCTTTCCTAAAGTGGGTTGGATTATTGATCGGATTAGTGGTGTTCATAGGAGATTGGAGAAGAGTTTTGCTGAGTTGGATACTTTTCTTCAACATGTAGTTGATGATCGCATTAAATTTAGGGAGATTTCTCATAATAATGATGATCAAGAAAACATTCTTGATGTTTTGTTGAAAAAGGAGAAGGATGGCTCTGAATTTGATGCAGTGAAACTCACTAGAGATTGCATCAAAGCACTTGTCATGGATATATTTATAGCTGGAGTGGAAACAGGAGCAAACACACTTGTTTGGGCAATGACAGAGTTGGTAAAAAATCCAAAAGTGATGAAAAAGCTACAAGGTGAGATCAGAAGTTGCGTAAGAAAAAGTAAAGTAGTAAAAGAGAGGGACCTCGAAAATCTTGAATACCTAAAAGCCGTAGTGAAAGAAGTTCTAAGGTTGCATGCACCCGCCCCACTTCTGCTTCCAAGAGAAACCATGTCCCATTTTAAGCTAAATGGTTATGATATTAATCCAAAAACTCGTGTTCATGTCAACGTGTGGGCGATCGGACGAGACCCAAAATTATGGACTAACCCAGAAGCATTCTTGCCTGAGAGATTTATAGGGAGTGATATTGATTACAAAGGGCAGAATTTTGAGTTATTGCCATTTGGATCTGGTCGAAGAATTTGTCCTGGGATGAACATGGCAACCATTACAGTGGAGTTAGCATTGTCTAATATGTTATTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATGTGGACATGGAAGAGGAACCTGGTATTGCAATTGCCAAGAAATCACCTCTTCACCTTCTTCCACTCCCTTACTTCAACTCCAAACAATAG 1623 39.19 MNIHLSLLQKPFISKKKEMVSLDQIIHSIVIMWFPLTMVLLSSLLFLKTKMKFGRHNNKNVIVPPPSPPKLPLLGHLHLITSLPHRSFFNLSKKYGPVILLKLVSIPTVVVSSADAAKEVLKLHDLASCSRPQSAAGARFSYNYLDIGLAPYGDHWREVRKICVLELFSARRVQSFQMIREEEIGVLLNSISQSSSFATPIDLSEKLYSLTANMIARIAFGKCFRGSELENKNFQKVIRGGLVALGSFSATDFFPKVGWIIDRISGVHRRLEKSFAELDTFLQHVVDDRIKFREISHNNDDQENILDVLLKKEKDGSEFDAVKLTRDCIKALVMDIFIAGVETGANTLVWAMTELVKNPKVMKKLQGEIRSCVRKSKVVKERDLENLEYLKAVVKEVLRLHAPAPLLLPRETMSHFKLNGYDINPKTRVHVNVWAIGRDPKLWTNPEAFLPERFIGSDIDYKGQNFELLPFGSGRRICPGMNMATITVELALSNMLLCFDWKLPNGMKEEDVDMEEEPGIAIAKKSPLHLLPLPYFNSKQ 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37315144 37327846 - ClCG05G025990.2 Cla05g02610 274100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02610 540 Gene3D Cytochrome P450 50 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 92 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 116 137 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS E-class P450 group I signature 432 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PANTHER CYTOCHROME P450 71B11-RELATED 30 534 - -
Cla05g02610 540 SUPERFAMILY Cytochrome P450 65 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02610 540 PANTHER CYTOCHROME P450 71B16-RELATED 30 534 - -
Cla05g02610 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Cla05g02610 540 Pfam Cytochrome P450 65 526 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02607 Cla-Chr5:37288721 Cla05g02610 Cla-Chr5:37315144 0 dispersed
Cla05g02608 Cla-Chr5:37303566 Cla05g02610 Cla-Chr5:37315144 0 dispersed
Cla05g02609 Cla-Chr5:37313150 Cla05g02610 Cla-Chr5:37315144 2.55E-125 tandem
Cla05g02610 Cla-Chr5:37315144 Cla05g02611 Cla-Chr5:37322308 2.55E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02610 - - csv:101216707 762.681