Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02611 ATGTCTCCTCTTCTCTTCATCTTCTTATTGTCTCTACTTGTATTGATCCTAAAATGGAAGAAAAATGCGAAGAGAAAAAAGGGTAAGTTTCCTCCGACTCCACCAAAGCTTCCAATCATAGGAAACTTACACCAAATTGGGAAGCTCCCACACAAATCTCTATGGCGTCTCTCTCAGCTTTATGGCCCCATCATAAGCCTCGACCTCGGCAGCATTCAAACCACCGTCATCTCCTCCGCTGACGCCGCCCGTAGCCTCTTAAGAACACACGACCTTCAAACCTGCAGTCGACCGCAAACCGAAAGTGCCAGAAAGCTCACTCACAATTTCCACGACATTGCGTTTTCCCCTTACGGAGATTACTGGCGAGAGATGAGGAAAATTTGTGTTCTTGAGCTTTTTAGTCTCAAGAGGCTCAAATCTTACGAACCCATTAGAGATCAGGAAGTGAATTCGCTTATGGAATCAATTTCGGAGCTGGCTTCTTGTGGTGCGGCTGTTGATCTTACTCAGAAATCAATGGCTCTCACTGCTGCTATTATTTTTAGGATTGCTTTTGGGAAGAAGGTGATTGAAGGAGATGGATTTCATGAGCTTGTGAGTGAAGCTGAGGCTTTGTTGGGAAGTTATAGCGGTTATGAGTTGTTCCCTAATCTTATAGGGAAGGTTATTGATTGGTTTAGTGGACACCAAAGAAAGGTTTTGAAGGTTTTTAATGAGTTGGATGCTTTGTTTCAAGAGGTGATGGATGAACATCTTTGTGTTGAGAGAGATAAAACTGATCAGGAAGATGATATTATTGATGTGCTTTTGGGAATTAGCCAAAACCAACATCAACCGCCTTCCAATGTTTCCATTTCCCATCAACATATCAAAGGCCTTCTTTTGAACATATTTTTGGGAGGACTGGACACAAGTTCCATAACAATAGTATGGGCAATGGCAGAACTTGCAAAGAAACCAAAATTAATGAAGAAAGCTCAACAAGAAATCAGAAGTTACATCGGAAACAGAGGAAAAGTAAGAGAGAAAGACACAGAAGAGTTTCCATATCTAAAAATGATAGTGAAAGAAACCCTGAGATTGCATCCTCCAGCACCCCTTCTTCTTCCAAGACAAGTCATTTCCCATTTCCTAATGGATGGCTTTGATATTTACCCAAAAACAGTGGTTCAAGTCAATGCTTGGGCAATTGGACGAGACCCCAGATGCTGGAAACACCCACAACAATTCGTACCGGAGAGATTTATAGACAGCTCTGTTGATTACAGAGGACAGCATTTTGAGCTGCTACCGTTTGGGGCTGGCCGGAGGATGTGTCCGGCGTTGAATATGGGGATCAGAATTGTGGAGTTCACTTTGGCGAATCTTTTGTACCATTTTGATTGGAAGTTGCCGGAGGGGATGAAGGAGGAGGATTTGGATATGGAAGAGATCTCTGGGTTTAGCCTCACCATTTACAAGAAGTTGCCTCTTCAACTCGAACGAAGACTATTGTTTGGAGTTGAAGTAAGGGAGTGGAAGAAGGTGAAGAGGTGA 1539 42.95 MSPLLFIFLLSLLVLILKWKKNAKRKKGKFPPTPPKLPIIGNLHQIGKLPHKSLWRLSQLYGPIISLDLGSIQTTVISSADAARSLLRTHDLQTCSRPQTESARKLTHNFHDIAFSPYGDYWREMRKICVLELFSLKRLKSYEPIRDQEVNSLMESISELASCGAAVDLTQKSMALTAAIIFRIAFGKKVIEGDGFHELVSEAEALLGSYSGYELFPNLIGKVIDWFSGHQRKVLKVFNELDALFQEVMDEHLCVERDKTDQEDDIIDVLLGISQNQHQPPSNVSISHQHIKGLLLNIFLGGLDTSSITIVWAMAELAKKPKLMKKAQQEIRSYIGNRGKVREKDTEEFPYLKMIVKETLRLHPPAPLLLPRQVISHFLMDGFDIYPKTVVQVNAWAIGRDPRCWKHPQQFVPERFIDSSVDYRGQHFELLPFGAGRRMCPALNMGIRIVEFTLANLLYHFDWKLPEGMKEEDLDMEEISGFSLTIYKKLPLQLERRLLFGVEVREWKKVKR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37322308 37325014 + ClCG05G026000.2 Cla05g02611 274101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02611 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Cla05g02611 512 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 SUPERFAMILY Cytochrome P450 31 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PANTHER CYTOCHROME P450 71B11-RELATED 13 496 - -
Cla05g02611 512 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 Pfam Cytochrome P450 31 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 Gene3D Cytochrome P450 15 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02611 512 PANTHER CYTOCHROME P450 13 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02611 - - K01773 csv:101216461 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02609 Cla-Chr5:37313150 Cla05g02611 Cla-Chr5:37322308 0 dispersed
Cla05g02611 Cla-Chr5:37322308 Cla05g02602 Cla-Chr5:37249721 5.58E-93 dispersed
Cla05g02610 Cla-Chr5:37315144 Cla05g02611 Cla-Chr5:37322308 2.55E-156 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g614 . . . . . . . . . Cmo18g00737 . Cma18g00741 . . . . . Bhi07g01818 . . . . . . Cla05g02611 . . . . . . . . . . Lsi04g00625 Csa05g02270 Chy10g00833 Cme10g00599 Blo06g00840 . . . . . . . . . . Cma04g01787 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216