Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02617 ATGGGAAAGAAGAAAAATGGGCTTTTCAGATATGCTGATTGGGTGGATAAGTTGCTGATTTTAATGGGTTCTTTAGGGAGTATTGGAGATGGGATTACAACTCCACTCACTATGATTGTTCTCAGTGGTATGATCAATAACTATTCTGCCTCTGATTCCAACTCTTTTTCCAATCATGTAGTGGACAGGTATGCACTCAATCTGCTTTATATTGCTATTGGAGTTGGACTCTGTGCTTTCTTTGAGGGAGTGTGCTGGACTAGGACAGCAGAAAGACAGACATCTCGCATGAGAATGGAGTACCTAAAATCAGTTTTGAGACAAGAAGCTGGTTTTTTCGACAGTAATCAAGCCGCTTCTTCTACATTCCTTATTGTTTCCTCCATCACTTCTGATTGCCACACTATCCAGGATACCATAGCTGAAAAGATACCAAACTTTCTGGCTCACGTCTCCGGCTTTATCTTCTGCATTCCTGTTGCATTTATGCTCTCATGGAAGCTTGCTTTGGCTGCCCTTCCATTCTCTCTCATGTTTGTTATTCCAGGGGTTGGATTTGGGAAGGTTTACAAGAACTTAGGTGTCAAGGCCAAAGAGTCTTATGTGGTTGCTGGTAGCATTGCCGAACAAGCAGTCTCTTCGATACGCACTGTGTATTCATACGTAGGAGAGCTCCAAACTCTAGAGAAGTTCAGTCATGCACTTCAAAAAAGCATGAACTTTGGCACTAAACAAGGCCTTGGGAGAGGACTTATGATGGGCAGCATGGCAATGATATATGCTGCTTGGGCATTTCAGGCATGGATAGGCGGTATTCTTGTCACTGAAAGAGGAGAAACAGGTGGAGCTATTTTGATATCTGGAATATGTATCATTTTTGGTGGACTGTGTGCTATGAATGCACTCCCAAATCTCTCTTTCATCTCTGAGTCAACAATTGCTGCATCTCGCATTTTCGAAATGACTGACCGCGTTCCCACCATAGATGCTGAAGATGGTAGAGGAAAATCTTTGGACTATTTAAGAGGAAAAATTGAGTTTAGAGATGTTGAATTTTCCTATCCTTCCAGACCGGCAACCCCCATTCTTCAAGGACTTAATCTCAAAATAAAGGCCGGGGAGACAGTAGGCCTTGTTGGAGGTAGTGGCTCAGGCAAGTCCACTGTGATTCATTTATTGGAGAGATTCTATGACCCTGTCAAAGGAGACATTCTTCTTGATGGTCATAAGATAAAGAAGCTTCAGCTCAAATGGCTGAGATCCCAAATGGGATTAGTCAATCAAGAGCCAATTCTATTTGCAACCTCCATAAAGGAAAATATTTTGTTTGGTAAGGAAGGAGCTTCAATGCAACTTGTTAAAAGAGCAGCTAAGGCTGCAAATGCTCATGATTTCATTGCAACATTACCTGATGGATATGAGACTCAAGTGGGGCAATTTGGTGTTCAATTGTCTGGAGGGCAAAAGCAAAGAATTGCAATAGCAAGGGCTCTAATCAGAGATCCCAAAATTCTTCTATTGGATGAAGCAACCAGTGCTTTGGATGCAGAGTCTGAAAGAATTGTACAAGATGCCCTGGACCAAGTTTCACATGGAAGGACTACCATTGTCATTGCGCACCGTCTCTCGACAATCCAAAAGGCTGATCAGATTCTTGTTCTTCAGTCAGGTAGAGTGGTAGAGTCTGGTTCTCATGAGGAGTTACTTCAAAGAAATAATGAAGGAATTTACAGAAAAATGGTGCAATTGCAGCAATCTTGTATGGAAAATGAAGCTTCTAGTTCTTTGTATCATTCTACTAGAGAAACAAATCTCCAACAAATAGTAGGAGCCAAAACTCCCTTGACACCAATAAACCAAATATCAGTTCGTCGAAGCAGCCCAATCTGGCACAGCAGTCCAGTATATTCCATCAGCATGTCATCTCCATACTCGGTCGACGTTGACTCTAGTGATTACAGTTATTGTGAAGGCTTGAAGAATACCTCGAGTTCTTCTCAATCTCCTTTGCAATGGCGCCTCTGGAGATTGAATGCACCTGAGTGGAAACAGGCATTACTTGGTTGTATGGGTGCTATAGGCACTGGAGTTACTCAGCCAATATATTCCTATTGCTTAGGAACAATCACCTCAGTTTACTTCCTAAAGGACAGTGAGGCTATTAAATCAAACATTAGATTCTATTGCTTCATATTTTTAGGCATAACAGTTCTTAGTTGTATATCCAATCTAGTCCAGCATTACAGCTTTGCAATCATGGGAGAAAATTTAACCAAGAGGGTGAGAGAAAAAATGCTTGAAAAAATCATGACCTTTGAGATTGGATGGTTTGATCAAGACGAGAATACAAGTGCCGCGATATGTGCACGACTAGCTGTTGAAGGAAACTTGGTTAGATCTCTTATAGCAGAAAGAACATCACTATTGGTTCAGGTAGTTGTGACTGCCACATTCGCATTTGTGCTTGGGTTAGTTGTGACATGGAGAGTAGCCATTGTAGCAATTGCTATGCAACCACTTATTATTGGAAGCTTCTATTCAAGAAAGGTTCTGATGAGAAGTATATCTGAGAAGGCTAGGAAATCACAAGGTGAAGGCAGTCAACTAGCTAGTGAAGCCATTACCAACCACAGAACTATTGCTGCATTTTCTTCTCAAGATAGGATTTTGAGTCTGTTTGAAGCTTCAATGGAATCTCCCAAGAAGGAGAATGTAAAACAATCATGGATTTCGGGTTTTGGTTTATTCAGCTCCCTATTTCTTACTACAGCAACAACAGCTTTGACACTGTGGTATGGAGGGAGACTAATAAATCAAGGATTAGTAACATCAAAACAACTTTTCCAAGCATTTTTCATCTTGATGAGCACTGGAAAGAACATTGCAGATGTAGGAAGCATGTCATCAGATATAGCAAAAGGTGCAAATGCCATAGGATCAATTTTTGGAATCCTAGATAGAGAAACTGAAATAGACCCTCAACAACTTGAAGGGTTAAAAGTTAAAGAGACAATTTGTGGAGAAGTAGAATTGAAGAATGTATTTTTCGCTTACCCGGCTAGGCCTGACCAATTGATCTTCAAGGGACTGAATCTAAAAATTGAAGCTGGAACAACAGTTGCGCTGGTTGGGCAGAGTGGTTCGGGTAAATCTACTGCCATTGGATTGATCGAAAGATTTTACGATCCTCAAAAGGGAGTAGTCCTCATTGATGGAATAGACATCAAGAGCTATAATCTGAGAAGTTTGAGGTCACACATTGCGCTAGTGAGTCAAGAACCCACACTTTTCGCAGGAAGTATACGCAATAACATTCTATTCGGGCAAGACGAACGTTCCGAAAACGAAATTAGGAAGGCTGCAAAACTTGCCAAGGCTCATGAGTTCATTAGTTGTATGAAGGATGGGTATGATACTCAATGTGGAGAAAGAGGAGTTCAGTTATCAGGAGGTCAGAAGCAGAGAATAGCTTTAGCAAGAGCCATATTGAAGAATCCAAAAATCCTTCTACTAGATGAGGCAACCAGTGCTTTGGATAGCCTGTCACAGACTTTAGTCCAAGAAGCATTGGAAAAGATGATGGTTGGTAGAACAAGCCTGGTCGTCGCTCATCGATTATCGACTATACAGAAAGCAGATTCAATAGCTGTAACAAAACAAGGTAAGATTATTGAACAAGGATCACACTTGGATCTACTTGGACGTGGACAAAGTGGAGCATACTACTCTCTGATTAACCAGCTAAAAACTCAATCTCTCTGTTATGGAATCGAAAAATAA 3780 41.03 MGKKKNGLFRYADWVDKLLILMGSLGSIGDGITTPLTMIVLSGMINNYSASDSNSFSNHVVDRYALNLLYIAIGVGLCAFFEGVCWTRTAERQTSRMRMEYLKSVLRQEAGFFDSNQAASSTFLIVSSITSDCHTIQDTIAEKIPNFLAHVSGFIFCIPVAFMLSWKLALAALPFSLMFVIPGVGFGKVYKNLGVKAKESYVVAGSIAEQAVSSIRTVYSYVGELQTLEKFSHALQKSMNFGTKQGLGRGLMMGSMAMIYAAWAFQAWIGGILVTERGETGGAILISGICIIFGGLCAMNALPNLSFISESTIAASRIFEMTDRVPTIDAEDGRGKSLDYLRGKIEFRDVEFSYPSRPATPILQGLNLKIKAGETVGLVGGSGSGKSTVIHLLERFYDPVKGDILLDGHKIKKLQLKWLRSQMGLVNQEPILFATSIKENILFGKEGASMQLVKRAAKAANAHDFIATLPDGYETQVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQDALDQVSHGRTTIVIAHRLSTIQKADQILVLQSGRVVESGSHEELLQRNNEGIYRKMVQLQQSCMENEASSSLYHSTRETNLQQIVGAKTPLTPINQISVRRSSPIWHSSPVYSISMSSPYSVDVDSSDYSYCEGLKNTSSSSQSPLQWRLWRLNAPEWKQALLGCMGAIGTGVTQPIYSYCLGTITSVYFLKDSEAIKSNIRFYCFIFLGITVLSCISNLVQHYSFAIMGENLTKRVREKMLEKIMTFEIGWFDQDENTSAAICARLAVEGNLVRSLIAERTSLLVQVVVTATFAFVLGLVVTWRVAIVAIAMQPLIIGSFYSRKVLMRSISEKARKSQGEGSQLASEAITNHRTIAAFSSQDRILSLFEASMESPKKENVKQSWISGFGLFSSLFLTTATTALTLWYGGRLINQGLVTSKQLFQAFFILMSTGKNIADVGSMSSDIAKGANAIGSIFGILDRETEIDPQQLEGLKVKETICGEVELKNVFFAYPARPDQLIFKGLNLKIEAGTTVALVGQSGSGKSTAIGLIERFYDPQKGVVLIDGIDIKSYNLRSLRSHIALVSQEPTLFAGSIRNNILFGQDERSENEIRKAAKLAKAHEFISCMKDGYDTQCGERGVQLSGGQKQRIALARAILKNPKILLLDEATSALDSLSQTLVQEALEKMMVGRTSLVVAHRLSTIQKADSIAVTKQGKIIEQGSHLDLLGRGQSGAYYSLINQLKTQSLCYGIEK 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37385108 37389978 - ClCG05G026090.1 Cla05g02617 274107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02617 1259 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524
Cla05g02617 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1246 IPR027417 -
Cla05g02617 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 20 318 - -
Cla05g02617 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 21 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g02617 1259 SUPERFAMILY ABC transporter transmembrane region 7 329 IPR036640 GO:0005524|GO:0016021
Cla05g02617 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g02617 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 12 1248 IPR039421 -
Cla05g02617 1259 SMART AAA_5 372 558 IPR003593 -
Cla05g02617 1259 SMART AAA_5 1036 1229 IPR003593 -
Cla05g02617 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cla05g02617 1259 Gene3D ABC transporter type 1, transmembrane domain 67 915 IPR036640 GO:0005524|GO:0016021
Cla05g02617 1259 Gene3D - 343 604 IPR027417 -
Cla05g02617 1259 PANTHER OS04G0481700 PROTEIN 12 1248 - -
Cla05g02617 1259 Pfam ABC transporter transmembrane region 22 287 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g02617 1259 Pfam ABC transporter transmembrane region 687 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g02617 1259 SUPERFAMILY ABC transporter transmembrane region 673 992 IPR036640 GO:0005524|GO:0016021
Cla05g02617 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 584 IPR027417 -
Cla05g02617 1259 CDD ABC_MTABC3_MDL1_MDL2 345 584 - -
Cla05g02617 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Cla05g02617 1259 Gene3D - 999 1253 IPR027417 -
Cla05g02617 1259 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Cla05g02617 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
Cla05g02617 1259 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Cla05g02617 1259 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Cla05g02617 1259 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02617 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101217411 2119.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01535 Cla-Chr5:25551563 Cla05g02617 Cla-Chr5:37385108 2.65E-100 dispersed
Cla05g02617 Cla-Chr5:37385108 Cla09g01816 Cla-Chr9:35767834 1.01E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g601 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02617 . . . . . . . Cone19ag1084 . . Lsi04g00630 Csa05g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136