Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02618 ATGGCGGAAACCGGCGTATACGGCCGTTTTCTGGCGGGGAGTTTAGACCCAAGAGCCCAAGAGTTCCGGCCAAGGCATTCCACCACTCTGTTCATGCCGCAGCCCCATCGGGTTTTCTTTCCGTACCCACCAATTGCTGATGTTCCTCTCCTGCCGTACTGCGATGGCGGTGTAACTTACGCGCAATTTCCAGCGGCGGAGCCAGCGTACTTTCCGATGCGGTTGCCGGTGTCGTCGGTTGCGACTCGGTCGCTGGTGATGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGAAGGGAATTGGAAGCGTTTGGGGAGGTCCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTAATTGTTCATTTCTATGATATTCGCCACGCCGAGAGAGCTTTGCGAGAGATTCGGGATCAGCACATGCACCATCAATGTCGTCTTCGTACCTACTTCAACAGCAATAATAACGGTTTCTTGTTTCCAAATTCCCCTCTCCCTCGCCCTTCTCCGACGCCTGGCCTCATCGCCGGCCATGCTGTCTGGGCTCAGTTCATCGTTCCGGCTGGCAAGAATCAGGGCACCATCGTCGTCTTCAATTTGGATTCCACCGTTTCCACTTCTTGTCTCAGAGAAATCTTCGAGGCTTTTGGACCCGTGAAGGAGTTGAGAGAGACGCCATTGAAGAAACAACAAAGGTTCGTTGAATTTTTCGACATCAGGGACGCTGGAAACGCTCTTAAGGAGATGAACGGAAAGGAAATCAATGGAAAACCGGTTGTGATTGAGTTCAGTCGGGCGGGAGGTCATGGCAACAAGTTCTTCAATGCCAACTTGACTGCTCCGGCCATCTGCGGCTCGAATAATATATACTCCAGGAGTCTAAAATGCCCACCGCCGCCGCCGAGAAATTTCTCTGGTGGGGCAGCTTCAAATGTTCCGCCACGCTGGTATTATTCGAAACCTCATAGTTCTAGGAAATTGAATCCGAGGAAGGGGAGTCGAAGCCCGAGAAACCCCAGGAAGAGCTTGGGGGCCGAGGATGTGAATGGAAAAATGGCTTCCCTCGATTTGGAAGGCGGCGGTGTGTGTAATGAAATTGAAGAGAGAGAATCATGTGAGGTTTTGAGAAAGAATTCAAAGACCAGCCACAGTAGTCCCGTTGTAGCTGCTGACCAACAACAACAACTGCAGCCCAGTAGGAATAAGCTAAGGAAATGTAGACCGTCTAGGAAATTCGATACTCGATTCCTGATAAACAATAACGACTCCGATTGCAAAGATTCGAGAACCACTGTGATGATCAAGAACATCCCTAACAAGTACAGTCAGAAATTGTTGTTGAACATGCTGGACAATCATTGCATTCACTGCAACGAGCAGATGGGCGATCGCCAAAACCAACCACTTTCCTCCTACGATTTTGTATATCTCCCCATTGATTTCAACAACAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCGGAGGCCACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTCAACTCAAGAAAAATCTGTGAAGTCACCTATGCTAGAGTACAGGGACTGGAATCTCTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACCTGCCAGTAGTGTTTTCACCGCCTCGGGACGGGAGGCTACTGACGGAGCCACTGCCGATTGGCGGCCAGAGACAGCCCGTCTCCATTGGCTTCTCAACTACTACTCTATCTTCTGGGAATGCTGAGATGGACGGTGAAGATGATGTTGCAATTGCGACAACACTGGTTGACCAACAAGAGGAAGGCATGAATGGAAGTAGCAGTAGCAAAAGTGGCGGTGGTGTTGACGAAGAATACGACGGTGATGAGTATCAAGCCGAATCCATGAAAGTATTATGA 1938 49.59 MAETGVYGRFLAGSLDPRAQEFRPRHSTTLFMPQPHRVFFPYPPIADVPLLPYCDGGVTYAQFPAAEPAYFPMRLPVSSVATRSLVMSSVPCDVSETMVRRELEAFGEVRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRTYFNSNNNGFLFPNSPLPRPSPTPGLIAGHAVWAQFIVPAGKNQGTIVVFNLDSTVSTSCLREIFEAFGPVKELRETPLKKQQRFVEFFDIRDAGNALKEMNGKEINGKPVVIEFSRAGGHGNKFFNANLTAPAICGSNNIYSRSLKCPPPPPRNFSGGAASNVPPRWYYSKPHSSRKLNPRKGSRSPRNPRKSLGAEDVNGKMASLDLEGGGVCNEIEERESCEVLRKNSKTSHSSPVVAADQQQQLQPSRNKLRKCRPSRKFDTRFLINNNDSDCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDRQNQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRDGRLLTEPLPIGGQRQPVSIGFSTTTLSSGNAEMDGEDDVAIATTLVDQQEEGMNGSSSSKSGGGVDEEYDGDEYQAESMKVL 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37393069 37396531 - ClCG05G026100.1 Cla05g02618 274108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02618 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Cla05g02618 645 SUPERFAMILY RNA-binding domain, RBD 83 268 IPR035979 GO:0003676
Cla05g02618 645 MobiDBLite consensus disorder prediction 304 354 - -
Cla05g02618 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Cla05g02618 645 SUPERFAMILY RNA-binding domain, RBD 410 514 IPR035979 GO:0003676
Cla05g02618 645 MobiDBLite consensus disorder prediction 609 645 - -
Cla05g02618 645 CDD RRM1_EAR1_like 82 150 - -
Cla05g02618 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Cla05g02618 645 MobiDBLite consensus disorder prediction 381 405 - -
Cla05g02618 645 PANTHER TERMINAL EAR1-LIKE 1 32 623 - -
Cla05g02618 645 PANTHER RNA BINDING PROTEIN 32 623 - -
Cla05g02618 645 Pfam RNA recognition motif 2 432 542 IPR007201 -
Cla05g02618 645 Gene3D - 191 275 IPR012677 -
Cla05g02618 645 MobiDBLite consensus disorder prediction 610 626 - -
Cla05g02618 645 MobiDBLite consensus disorder prediction 379 405 - -
Cla05g02618 645 CDD RRM3_EAR1_like 432 533 IPR034458 -
Cla05g02618 645 Gene3D - 78 155 IPR012677 -
Cla05g02618 645 SMART rrm1_1 197 265 IPR000504 GO:0003723
Cla05g02618 645 SMART rrm1_1 84 153 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02618 - - - cpep:111791714 1069.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00884 Cla-Chr3:12290676 Cla05g02618 Cla-Chr5:37393069 3.23E-30 dispersed
Cla05g02618 Cla-Chr5:37393069 Cla11g01518 Cla-Chr11:28815831 3.33E-31 dispersed
Cla01g02367 Cla-Chr1:37385148 Cla05g02618 Cla-Chr5:37393069 1.92E-23 transposed
Cla06g00157 Cla-Chr6:1762811 Cla05g02618 Cla-Chr5:37393069 1.65E-23 transposed
Cla09g02181 Cla-Chr9:39444144 Cla05g02618 Cla-Chr5:37393069 8.75E-24 transposed
Cla05g02618 Cla-Chr5:37393069 Cla08g01717 Cla-Chr8:29728835 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54