Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02623 ATGAGTGGATTCAAGAGTGGAAGTTTGTTGAACAATCCGACTCATCTTCTACCAAGTTTGGGCACTGCAAAGCCTTTGGCAGTGCCCATGGATGCCACGACAAGCGAAACGGCGGCTATACAGTTCCATAGCATTCCTGATCAATCAGTTTCTGCTATTGTCACCAATGCAACATCGACATTTCCACAATCGAAACGACATTGCTTTGGGGAATCTGACCCTGGCGAATTTCCCTTAGCTGCTAATCCTTCCATTGTTCTTCATGTTCTGACGGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGCAAGATCTTTCATTTCCTTTGCGACATGTTCATTCTTTAGACAGCCTGCAAACTTTGCTCCTGACTATGAATTGTCAATTTCGGAGCTTGCTGCATTAGATATGTGCCAAAAGAGAGCCATATTCAAACCTATGACAGCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGAGGTTCGTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAAACATGTTGCAGGAGGGAAAAATCCATGGCAATAGCAGGACCTGGTCACAGCATCGCTGTCACATCAAAAGGAGCTGTTTACTCCTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACCACTGAAGAGGAATCACGGCCTCGCCTCATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGGCGGGAGGACAATGTTAATCAGCGACGCCGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGTGCTCAAGGAGCTCAAGTTATTACTACACCAAAGTTGGTCGAATCCCTGAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACTGCTGTATTATCAAGAGAAGGTAGGGTGTACACATTTTCTTGGGGGACTGACGGTAGGCTCGGTCATCATACCGAACCAAATGACTTGGAACCACGGCCCCTGATGGGAGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTTGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGGTGTGGACTGGGTGGGAAGCTCGGTCATGGTTCAAGGACCGATGAGAAACAGCCACGACTTATTGAACAATTTCAGCTTCTGAATCTCCAGCCAGTTGTGGTCGCGGCTGGTGCTTGGCATGCAGCTGTTGTAGGTCGCGATGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGTCTGGGTCATGGAAATGAGGAATGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAAGCAACGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGTGACGTGTATTCTTTCGGTTGTGGAGAATCCGCTAGTCTTGGACATAATATCGCCATCCCCGAGGAACAGGGGAATCGGCAACCTCACGTGTTAAGCCCAGAACTAGTCAGGTCTCTGAAGCAAATTAACGAACGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACCGAGTCGGGGAAGTTGTATGCATTTGGAGCTGGAGACAAAGGGCAGCTCGGGGTCGAACTTCTGGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTGAATTAA 1716 46.85 MSGFKSGSLLNNPTHLLPSLGTAKPLAVPMDATTSETAAIQFHSIPDQSVSAIVTNATSTFPQSKRHCFGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEARSFISFATCSFFRQPANFAPDYELSISELAALDMCQKRAIFKPMTAEQHQALKQRCGGSWKLVLRFLVAGETCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGGGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVITTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGTDGRLGHHTEPNDLEPRPLMGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKQPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNIAIPEEQGNRQPHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERGNPERVDIDLN 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37425096 37432555 - ClCG05G026150.2 Cla05g02623 274113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02623 571 SUPERFAMILY RCC1/BLIP-II 184 484 IPR009091 -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 358 IPR000408 -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 571 IPR000408 -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 415 IPR000408 -
Cla05g02623 571 Pfam Regulator of chromosome condensation (RCC1) repeat 467 518 IPR000408 -
Cla05g02623 571 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Cla05g02623 571 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Cla05g02623 571 Pfam Regulator of chromosome condensation (RCC1) repeat 364 412 IPR000408 -
Cla05g02623 571 Pfam Regulator of chromosome condensation (RCC1) repeat 415 464 IPR000408 -
Cla05g02623 571 Gene3D - 359 570 IPR009091 -
Cla05g02623 571 Gene3D - 183 358 IPR009091 -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 535 IPR000408 -
Cla05g02623 571 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 30 571 - -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 405 423 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 202 218 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 292 308 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 308 322 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 252 268 IPR000408 -
Cla05g02623 571 PRINTS Chromosome condensation regulator RCC1 signature 463 484 IPR000408 -
Cla05g02623 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 402 412 IPR000408 -
Cla05g02623 571 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 30 571 - -
Cla05g02623 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 305 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02623 - - - csv:101205316 1003.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02623 Cla-Chr5:37425096 Cla11g01774 Cla-Chr11:31330699 6.13E-15 dispersed
Cla05g02623 Cla-Chr5:37425096 Cla03g01218 Cla-Chr3:25969879 9.32E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44