Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02627 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCTATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGCTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTCCGAGCAACTTTTCAATATGGAAGTTTGAAGGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTTGATGCTTCAAGAGTTTATGTGAAGGAGATGATCGTCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCTGTTAAAGTGATGCAGACTGCAGTTCTTGGCTCAAAAGGAGTGCTGAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGAGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACACGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATTGCAGAGAATGCTAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCATTCTCATTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTTGTGAATGTCTTCCGTAACGTGTCAGCAGAGAATGTTTGGTCAAATGAAGGTGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCGAGAATAACTAAGATAGAGCTTTCCAGAAAGAATGTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCTGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAATTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACGTGGGGCTGCATAAAAGTGAACGATACAAGATGCATTCTAAGCTTATAGTAGGAGTTTCATTGGGAGTGCTTGTGCTTTTGATTATTCTACTTTTAGGAAGTTTGCTGTTACTCCGCAAGCTTCGAAGAAGAACAGCACCTTACCAGAAAAAAGGCGGTTCTCTGCAAATCAGCACCAAGCGCTCTTCTGGCTACTCGATTGGCAAGGGGGATGAAGGCATGGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCGACAAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTGGCAGTTAAGATCATGGCCGAGTCATCTACACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGCGAAGAAGAACATCAACGGATCCTCGTTTACGAATATATGCATAATGGAACGTTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGATTGGCTGGCTCGGCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAGGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGATGTCTATAGTTTTGGGGTTGTGCTGCTCGAACTGATCTCTGGGAAGAAACCAGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGATGTGACGAGCATTGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATCGAACAAGGTACTGAAGGAAACCAAAAGCTATCTTCAGGCAGTTTAAAAGCACAATCGTCTCGAAAAACTTTGCTGACCACCTTTCTTGAAATCGAGAGCCCTGACGATACCGATACCGTGACTGAAATATTGTTTGATAGGGACAGAACAGTAGGAACACTGACAACACATCTTTTACCTTTCACCATTCTCTTATTGTTTACTTGTTCAAACCTGCACAGGAAACACAATGACCAACTATTCTCTAAAGATTGCCATTGCTTTACATGTAGGTCTGGGGTTTACCTTCTTCATCTTCAGTCTCTTCTTTGGTTTGGGATTTTGGGTCATAGAAGAGGGAAGGGAATCTTTCAGATTATGTATTATCAGCTCGAAAAATTCTCTCATCAGGATTCTCTGGAAGTCTTAGAGGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGCAAAAGGGGGTACCTATCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTCTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTGCTTCCAAGATATTTAAACCTCTTCCACATACTTGTGTACAAGGTATATCCAGAGGGAAAACAAAAACGAAATATATCCAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTATGCTATAATATTGCCTTCGCTTCAGCGAATCCATGGTAGCTTGGATAAGTTTGACGATTGCAAGGATGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGACTCATGAACATCGATATGAAGCGAGAAGATGAGTGTGGTATTTGCTTGGAGCCATGTACAAGGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTACCGAAATTGGAACACAAGGTCTGAGTCATGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGATTATCCAGATGCCCTCTTCGTAGTATATTCCGAATATCTAATTTAG 3756 42.33 MGFPLFWVLILLLVVSSVYCQVKEFISIDCGGTKNFTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIVRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGSKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDESVVNVFRNVSAENVWSNEGDPCVPTSWEWVTCSATQPPRITKIELSRKNVKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKSERYKMHSKLIVGVSLGVLVLLIILLLGSLLLLRKLRRRTAPYQKKGGSLQISTKRSSGYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGTEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDDTDTVTEILFDRDRTVGTLTTHLLPFTILLLFTCSNLHRKHNDQLFSKDCHCFTCRSGVYLLHLQSLLWFGILGHRRGKGIFQIMYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGTYLQMKLVYNHLAPIVLFLLQWMDCSCTCLLPRYLNLFHILVYKVYPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLDKFDDCKDGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTRMVLPNCCHSMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37465029 37475105 - ClCG05G026200.2 Cla05g02627 274117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02627 1251 PANTHER - 18 897 - -
Cla05g02627 1251 SUPERFAMILY Protein kinase-like (PK-like) 587 870 IPR011009 -
Cla05g02627 1251 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02627 1251 ProSiteProfiles Zinc finger RING-type profile. 1155 1193 IPR001841 -
Cla05g02627 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1203 IPR013083 -
Cla05g02627 1251 SUPERFAMILY L domain-like 389 503 - -
Cla05g02627 1251 Gene3D Transferase(Phosphotransferase) domain 1 679 896 - -
Cla05g02627 1251 SMART ring_2 1155 1192 IPR001841 -
Cla05g02627 1251 Gene3D Phosphorylase Kinase; domain 1 583 678 - -
Cla05g02627 1251 Pfam Malectin-like domain 28 360 IPR024788 -
Cla05g02627 1251 Pfam Ring finger domain 1153 1193 IPR001841 -
Cla05g02627 1251 Gene3D Ribonuclease Inhibitor 374 511 IPR032675 -
Cla05g02627 1251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Cla05g02627 1251 SUPERFAMILY RING/U-box 1146 1197 - -
Cla05g02627 1251 SMART serkin_6 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02627 1251 PANTHER OS07G0107800 PROTEIN-RELATED 18 897 - -
Cla05g02627 1251 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672|GO:0006468
Cla05g02627 1251 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Cla05g02627 1251 ProSitePatterns Zinc finger RING-type signature. 1170 1179 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02627 Cla-Chr5:37465029 Cla11g01631 Cla-Chr11:30002694 1.77E-146 dispersed
Cla10g00591 Cla-Chr10:8721005 Cla05g02627 Cla-Chr5:37465029 2.59E-71 dispersed
Cla10g02087 Cla-Chr10:36565890 Cla05g02627 Cla-Chr5:37465029 1.84E-63 dispersed
Cla05g02627 Cla-Chr5:37465029 Cla05g02628 Cla-Chr5:37476556 7.96E-64 tandem
Cla02g00596 Cla-Chr2:6462337 Cla05g02627 Cla-Chr5:37465029 1.65E-49 transposed
Cla02g01341 Cla-Chr2:27649696 Cla05g02627 Cla-Chr5:37465029 4.85E-22 transposed
Cla03g00069 Cla-Chr3:755723 Cla05g02627 Cla-Chr5:37465029 1.51E-65 transposed
Cla03g00325 Cla-Chr3:3851220 Cla05g02627 Cla-Chr5:37465029 1.22E-59 transposed
Cla03g00944 Cla-Chr3:15756460 Cla05g02627 Cla-Chr5:37465029 3.63E-27 transposed
Cla06g00563 Cla-Chr6:6824405 Cla05g02627 Cla-Chr5:37465029 1.87E-46 transposed
Cla07g01493 Cla-Chr7:32174037 Cla05g02627 Cla-Chr5:37465029 1.14E-72 transposed
Cla08g00253 Cla-Chr8:5230953 Cla05g02627 Cla-Chr5:37465029 2.33E-67 transposed
Cla09g00838 Cla-Chr9:8596011 Cla05g02627 Cla-Chr5:37465029 3.07E-124 transposed
Cla10g01958 Cla-Chr10:35410589 Cla05g02627 Cla-Chr5:37465029 0 transposed
Cla07g00396 Cla-Chr7:4912813 Cla05g02627 Cla-Chr5:37465029 4.32E-65 transposed
Cla05g02627 Cla-Chr5:37465029 Cla08g01708 Cla-Chr8:29657849 2.33E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80601 PF12819 Malectin_like 6.70E-86 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02627 - - csv:101207149 1729.15