Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02630 ATGGTCTATTTCTACACCGCCGGCTCCGCCAGCCCCGCCGAAATAGCCGACCACCTGAAAAAATCCCTCTCTGACGTCTTGACCCATTACTACCCTCTCGCCGGAAGAGTCAACTACGGCGAGTTTTTCATCGACTGCAACGACGATGGCGTCCCTTTCATCGAAACCAGAGTCAACTGCCGACTATCCGATGTAATGAACACGCCGTTTCCTTCTGAATTAAACAAATTTCTTCCGTTCGAATTGGACGAGCTTGACGAGATTTCGATGGGGGTTCAATTGAATGTATTCGAATGCGGCGGCGTTGGTGTCGGGATTTGTGTTTCTCATAAGATTAGCGATGCTCTGTCTTTTTTCATTGTGGTTAATGGGTGGGCGGCGTATTGCCGAGGGGAGAAGGAGGCGCTGCGGGCTCATTTGTCCTCGGCGGAGCTGTTTCCACCGACGAAGACGGGGCTTTACGACACGAGGACGAGTATTGTGAGACAGAGAGTGGCGAAACGGTATGAGATTGATGCTGCGAATGTTGAAAGTATTAGAGCTAAATATGCAGAATGCCCTGACATGGAAAACCAGAGGAAGCCTTCGAGAGTTGAGGCCTTGTCTGCCTTCATCTATAGTCGTTTTATTGCCGCCATTAAAGCCGTTTCAATAGAGAATGGAATCTGGGAATCGGAGAAGAAGATATTTCTAGTATGTCACGCTGTGAACATACGCTCAAGACTCGACCCACCGATCCCTGATTACGCATTCGGAAACTATTATAGATCCACATTCGCAGTTCCCTCAGAGGAGATTATTAATGACGACTATTGTTACGGTCTTGTGAAGCAAGCAAGAGAAGAAATTAGGAAGATCGACAAAGACTATCTCAACAGGCTTCAAGAAAGCTCCAAATTCCTCGACCACATGAAAAAGGCAGCTGCCCAATTCTCCACCGGAGAGCTCATCTCTTGCTCCTTCACCAGCCTTTGTCGGATGCCCATTTACGATGTTGATTTCGGGTGGGGTAAACCTGCCTGGATCACCTCCCCAGCCTTGACCTTCAAGAACCTCTTTGTCTTCATTGACAAAAAAGATGGCAATGGAGTTGATGTTTATGTTCATCTCAAACAAGAGCACATGAACAAGTTTGAAGCCGATCAAGAGTTCCTCAATTTAGCCTTCCTCGACCAAGTCACTGTCGATGTCTACAACCCAATGGTCTATTTCTACACCGCCGGCTCTGCCACCCCCGCGGAAATCGCCGACCACCTGAAAAAATCCCTCTCCGACGTCTTGACCCATTACTACCCTCTCGCCGGTAGAGTCAACTACGGCGAGTTTTTCATCGACTGCAACGACGACGGCGTCCCTTTCATCGAAACCAGAGTCAACTGTCGACTATCCGATGTAATAAACACGCCGTTTCCTTCGGAATTAAACAAATTTCTTCCGTTCGAATTGGACGAGCTTGACGAGATTTCGATGGGGGTTCAATTGACTGTGTTCGAATGCGGTGGCGTTGCTGTCGGGATTTGTGTTTCTCATAAGATTAGCGATGCTCTGTCTTTGTTCATTGTGGTTAATGGGTGGGCGGCGTATTGTCGGGGGGAGAAGGAAGCACTGCGGGCTCATTTGTTGTCGGCGGAGCTGTTTCCACCGACGAAGACGGGACTTTACAACACGAGGACGAGTATTTTCAGACAAAGAGTGGTGAGACGATATCAGATTGATGCTGCAAATGTTGAAAGTATTAGAGCTAAATATGCAGAGTGCCCTGCCATGGTAAACCAGAGGCGACCTACGAGAGTTGAGGCCTTGTCTACCTTCATCTATGGTCGTTTTATTGCCGCCATTAAAGCCGTTTCTAGTAGCGGGTTGGAGAACGAAAGGTCGGAATCGAAGAAGAAGATATTCCTAGTAAGCCAGTCTGTAAATATACGCTCAAGACTGGAACCACCTGTCCCTGATTATGCATTCGGAAACTATTACCGATCCGCATTTGTAGTTCCCTCAGAAGAGATTCTTAACGATGACTTTTGTTACGATCTTGTGAAGCGGATGAGGGAAGAAATTGGGAAGATCGACAAAGACTATCTAAAAAGACTTCAAGAAAGCTCCAAATTCCTCGACTCCATGAAAAAGACAGCCACACAATTCTCAACCGGCGACCTAATCTCTTGCTCCTTCACCAGCCTATGTCGGATGCCCATTTACGAGGCTGATTTCGGGTGGGGCAAACCCGACTGGATCAGCTCTCCTGCCTTGATCTTCAAGAACCTCTTTGTCTTCCTTGACAATAAAGATGGCGATGGAATTGATGTTTATGTTCATCTCGAACAAGAGCACATGAAC 2337 47.5 MVYFYTAGSASPAEIADHLKKSLSDVLTHYYPLAGRVNYGEFFIDCNDDGVPFIETRVNCRLSDVMNTPFPSELNKFLPFELDELDEISMGVQLNVFECGGVGVGICVSHKISDALSFFIVVNGWAAYCRGEKEALRAHLSSAELFPPTKTGLYDTRTSIVRQRVAKRYEIDAANVESIRAKYAECPDMENQRKPSRVEALSAFIYSRFIAAIKAVSIENGIWESEKKIFLVCHAVNIRSRLDPPIPDYAFGNYYRSTFAVPSEEIINDDYCYGLVKQAREEIRKIDKDYLNRLQESSKFLDHMKKAAAQFSTGELISCSFTSLCRMPIYDVDFGWGKPAWITSPALTFKNLFVFIDKKDGNGVDVYVHLKQEHMNKFEADQEFLNLAFLDQVTVDVYNPMVYFYTAGSATPAEIADHLKKSLSDVLTHYYPLAGRVNYGEFFIDCNDDGVPFIETRVNCRLSDVINTPFPSELNKFLPFELDELDEISMGVQLTVFECGGVAVGICVSHKISDALSLFIVVNGWAAYCRGEKEALRAHLLSAELFPPTKTGLYNTRTSIFRQRVVRRYQIDAANVESIRAKYAECPAMVNQRRPTRVEALSTFIYGRFIAAIKAVSSSGLENERSESKKKIFLVSQSVNIRSRLEPPVPDYAFGNYYRSAFVVPSEEILNDDFCYDLVKRMREEIGKIDKDYLKRLQESSKFLDSMKKTATQFSTGDLISCSFTSLCRMPIYEADFGWGKPDWISSPALIFKNLFVFLDNKDGDGIDVYVHLEQEHMN 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37487257 37499252 + ClCG05G026240.1 Cla05g02630 274120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02630 779 PANTHER F21J9.9 1 387 - -
Cla05g02630 779 Pfam Transferase family 383 778 - -
Cla05g02630 779 PANTHER F21J9.9 386 779 - -
Cla05g02630 779 Gene3D - 157 377 IPR023213 -
Cla05g02630 779 Gene3D - 1 153 IPR023213 -
Cla05g02630 779 Gene3D - 378 553 IPR023213 -
Cla05g02630 779 PANTHER ANTHRANILATE N-BENZOYLTRANSFERASE 386 779 - -
Cla05g02630 779 PANTHER ANTHRANILATE N-BENZOYLTRANSFERASE 1 387 - -
Cla05g02630 779 Gene3D - 563 779 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02630 K13065 E2.3.1.133, HCT; shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133] - csv:101218593 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00335 Cla-Chr3:3904027 Cla05g02630 Cla-Chr5:37487257 8.93E-81 dispersed
Cla05g02630 Cla-Chr5:37487257 Cla08g01706 Cla-Chr8:29643848 3.24E-123 dispersed
Cla05g02630 Cla-Chr5:37487257 Cla06g01718 Cla-Chr6:30712389 9.40E-71 wgd
Cla05g02630 Cla-Chr5:37487257 Cla08g01705 Cla-Chr8:29636970 7.94E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1130 . Blo16g01184 . . . . . . . . . . . . Sed04g0539 . Cpe01g01593 Bhi07g01861 Tan04g0104 Cmetu10g0799 Lac13g0094 Hepe10g0071 . . Cla05g02630 Cam05g2822 Cec05g2857 Cco05g2890 Clacu05g2825 Cmu05g2673 Cre05g2790 Cone13ag1116 Cone19ag1102 . . . . . Cme10g00626 . . . . . . . . . . . Cma04g01809 . Car04g01822 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001045 1 3 2 1 1 3 2 3 3 4 2 3 2 4 4 1 3 4 2 3 4 2 3 4 2 5 3 2 3 2 81