Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02634 ATGGTCCATCCTCCTCCGAACCGGAGCACAAAATTCTCTGAAACCTACTCTCCTCCCTTGCCGTCGCCGACAACTCGCATCAAAGACTCGAAGTTGTTTCTATCGAAGAGTCTCAAGAGCATTTGCGGTGCTCTTGATCGTTGTAAAGCATTTGCCTATTTTCATATATCCTCCCAAAGCTATTCCAATGCCCTGTCCTCTGCAAATTTTTCGTCTCCGCTGGAACCTACTATGTTTGTAGGAGCTAGAGATTTGCAGCAAAGAATTCCATCTGAATGTGAGACAAAACTTTCTGATATCAACTTGATCATTGCTAAAATTCAGGTGGGTAGCAGCGAGGATGAGGTTTTTCAGTGTCTTTTGCACGATCCAGTGTGTAACAGAATACAGTTCTCCCATGAAATTGTTTACAAGTTGCTCCAACGATTCAAAGATGACTGGAAATCTGCTTTGGGTGTCTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCACACACCAGATTTATATGACATTTTAATAGATACATTAGGTAAAACAAAGCAAATGACCAAGATGAAAAGTATGCTAGAAGAAATGAAGGAAGCTCGCCTTGTGACACTTGATACTGTAGCTAAGGCTATGCGAAGGTTTGCTGGTGCTGGACAATGGAAAGATGCTGTTAGGATATTTGATGATTTGGAAACTTTTGGGTTGGAGAAGAACACTGAATCTATGAATGTGTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCGAGCAAGCTCGACAGATATATTTGGAACTCAAATCACATATTCCCCCGAATGCCAACACATTTAACATGTTCATTCATGGTTGGTGTAAAGTTGATAGGGTTGATGAGGCACATTGGACGTTACAAGAGATGAAAGGGCATGGTTATCGTCCTTGTGTTATTAGTTATTCGACAATTATTCTATTTTATTGTCATCATTATAACTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCAGCAAATGTCATCACTTACACCACCATCATATGCTCACTAACAAAGTCAGACGAATTCGAGGAAGCCTTGCAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACTCGATACAGTTTTTTATAATTGTTTGATCCATACATTAGGAAGAGCGGGTAAAGTACGGGAAGCTATTCATGTATTCGAAGTAGAAATGCCAAGCAAGCGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACAGAAGGCTATGAAACTACTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGCCTTGATATATCAACCTATTCCCTTCTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCGAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGGTGAAGTTGCTGATAGGATTGAAGATATCATGAAGAACTTGTGA 1647 39.71 MVHPPPNRSTKFSETYSPPLPSPTTRIKDSKLFLSKSLKSICGALDRCKAFAYFHISSQSYSNALSSANFSSPLEPTMFVGARDLQQRIPSECETKLSDINLIIAKIQVGSSEDEVFQCLLHDPVCNRIQFSHEIVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQMTKMKSMLEEMKEARLVTLDTVAKAMRRFAGAGQWKDAVRIFDDLETFGLEKNTESMNVLLDTLCKEKKVEQARQIYLELKSHIPPNANTFNMFIHGWCKVDRVDEAHWTLQEMKGHGYRPCVISYSTIILFYCHHYNFSKVYELLDEMDAQGCPANVITYTTIICSLTKSDEFEEALQIAERMKSAGCELDTVFYNCLIHTLGRAGKVREAIHVFEVEMPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKQKNMGEVADRIEDIMKNL 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37544946 37547044 + ClCG05G026285.1 Cla05g02634 274124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02634 548 PANTHER OS02G0601600 PROTEIN 49 548 - -
Cla05g02634 548 Gene3D Tetratricopeptide repeat domain 402 547 IPR011990 GO:0005515
Cla05g02634 548 SUPERFAMILY TPR-like 212 517 IPR011990 GO:0005515
Cla05g02634 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 49 548 - -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cla05g02634 548 Pfam PPR repeat 170 196 IPR002885 -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 265 IPR002885 -
Cla05g02634 548 MobiDBLite consensus disorder prediction 8 22 - -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 170 199 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 486 517 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 272 303 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Cla05g02634 548 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Cla05g02634 548 Pfam PPR repeat family 409 458 IPR002885 -
Cla05g02634 548 Pfam PPR repeat family 234 282 IPR002885 -
Cla05g02634 548 Pfam PPR repeat family 303 350 IPR002885 -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cla05g02634 548 MobiDBLite consensus disorder prediction 1 22 - -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Cla05g02634 548 Gene3D Tetratricopeptide repeat domain 125 263 IPR011990 GO:0005515
Cla05g02634 548 Gene3D Tetratricopeptide repeat domain 264 332 IPR011990 GO:0005515
Cla05g02634 548 Gene3D Tetratricopeptide repeat domain 333 401 IPR011990 GO:0005515
Cla05g02634 548 Pfam PPR repeat 480 510 IPR002885 -
Cla05g02634 548 Pfam PPR repeat 370 399 IPR002885 -
Cla05g02634 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 409 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02634 - - - csv:101208612 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00522 Cla-Chr5:4836136 Cla05g02634 Cla-Chr5:37544946 1.01E-99 dispersed
Cla05g02634 Cla-Chr5:37544946 Cla08g00621 Cla-Chr8:18186900 7.09E-11 dispersed
Cla05g02634 Cla-Chr5:37544946 Cla07g01215 Cla-Chr7:29127503 2.74E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30