Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02636 | ATGGATTCAAATTCAAAGAAATCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCGTCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCAGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACGTTATCATCGGCCGGTGGGGAAAGCTGCGGCGGCGCAGTACCAAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCTTTTGAGATTCTGTTAAGAGAAGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGACTTGTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTGGAAACGCTGCAGTTAACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG | 510 | 50.0 | MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKKGDLLLGGEEVLSFCSLETLQLTPSHRPQSPMCR | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 37570802 | 37571311 | + | ClCG05G026300.1 | Cla05g02636 | 274126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02636 | 169 | Pfam | Auxin responsive protein | 23 | 130 | IPR003676 | GO:0009733 | |
| Cla05g02636 | 169 | PANTHER | SAUR FAMILY PROTEIN | 7 | 169 | - | - | |
| Cla05g02636 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 169 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00382 | Cla-Chr2:3705062 | Cla05g02636 | Cla-Chr5:37570802 | 8.02E-11 | dispersed | |
| Cla05g00058 | Cla-Chr5:643115 | Cla05g02636 | Cla-Chr5:37570802 | 1.84E-20 | dispersed | |
| Cla05g02636 | Cla-Chr5:37570802 | Cla09g00158 | Cla-Chr9:1639142 | 8.50E-42 | dispersed | |
| Cla10g00287 | Cla-Chr10:3787997 | Cla05g02636 | Cla-Chr5:37570802 | 1.14E-12 | dispersed | |
| Cla05g02636 | Cla-Chr5:37570802 | Cla02g00471 | Cla-Chr2:4562111 | 9.43E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02636 | K14488 | - | csv:101216710 | 273.092 |