Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02642 ATGTGGTTACCAAGATACAGCTTAGAAAGAAAAGAGAGATTGAATGTGAATGGATTTGTGGCAGTGGCAATTGATAAAGACAAAGGAAGCCAAGGAGCTCTCAAATGGGCGATTGATCATTTGCTTCAAAGAGGACACACTATTTTCCTCATCCATGTCAAACTCAGATCTCCTTCTAATTCTTCCCAAAAGATGAGTTTGAAATCTGACTCTGAATCCAGTGTCAAAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGTAAGGATATACAATGCAAAGATGTTGTGTTGGAAGATACAGATGTAGCAAAGGCCATAATTGAGTATGCTGCAAATACAGCCATAGAGAACATTGTCGTGGGTGCTTCAGCAAAATCTGGCTTCTTAAGGCATGCAACTGATGTTCCTGGCAGTGTAGTGAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGAAAAATCCAATCGATGCGTTCGGCATCTCGTCCTGCTCCACCGGTAACTGCTCTACGAGGTCAATTAGCGCAACAGTCCAGCGCAAAATCAGATATGCCTGACTTCTCTGTCTCTCACTCTGCAAGTGCAAGAGGTAACTTGTTTCAAACCAGTTTCCTTTTGCCTAATATGCCTGTTGTCTCACTGTTCTCCATGAAACTAATGTTGAATTTCTTGGCAGCGTCTTTGGATAAGCCACCACTTGATCTGCCTAGTAAATCACAAGACGAGGCCGATTTCATGAGTGATGAGGAAAATGTTGTTGGAAGCAGGTCCCCATTCACAAGGAAAGGATATAACTACAAAGCATCATATGGAGATTTGTCTATGCAAGATTCAGATATATCTTACGTTAGCTCGGGAAGACCGAGCATCGATCGTATATTTCCTTCACTTTATGACAGTCAAGATATGGGAGGAAGAGCCACACCACCACAGATTTCAAGCAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGGATGTCGGTGGATATGAACTTTCCGTCTGAGTTCTCTTCGATCTCACAAGATAGTGACAGAATGTCTATCTCATCACAGTCTATGGAAGATGTAGAGGCCGAGATGCGGAGGCTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGTACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGAAATCATATCTGTGGTTTGTGATGCAGGCGATCGAGCTACAACGCTGGAAACTAGAAGAAGAACAAAGATTAGAAGAGGCAAGATTGGCGGGGGAAGCTGCATTGGCACTAGCCGAACAAGAGAAGGCGAAGTCGAAAGCAGCAATTGAGGCAGCTGAAGCAGCTAGAAGAATTGCAGAATTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAAGAGAAGAAAAAGGCATTTGATGCATTGGCACAAAATGATATCAGGTATAGAAAGTATACGATCGAGGAGATCGAAGAGGCAACAGAGTTCTTTTCCGAATCTCGTAGGATCGGAGAAGGAGGATATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTCTACGTCCCGATGCGACTCAAGGACGATCTCAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTACGGCTGCTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTGCGACGAGGAAACACGCCTCCACTTTCATGGCAACTTAGGTTTAAAATTGCAGCTGAAATTGGAACAGCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTTGTGCATCGCGATCTCAAACCAGCTAACATTCTGCTCGATCGTAACTTTGTTAGTAAGATCAGTGATGTTGGCTTGGCTAGGCTTGTACCGCCATCCATTGCCGATAGCGTAACACAATATCGAATGACATCAACTGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAACTTATAACTTCTAGGCCGCCAATGGGATTAACTCACCATGTCGAAAGAGCTATCGAGAAGGGAACGTTCGAAAATATTCTCGATCCAGCTGTCCCTGATTGGCCTATTGAAGAAGCTTTGTCTTTCGCCAAGTTGTCACTCAAGTGCGCCGAGTTAAGACGTAAAGATAGGCCAGATCTTGGGAAGGTCATCCTTCCAGAGCTTAACAGGTTGAGAATTATTGCAGAAGAAACAATGCATCCAACACTGATGGGAGATATAAGCCCTTCTCGCAGCAGCAGTCAAGTTTCTTTTCAGTTGGGAGCAATGGCTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2466 43.76 MWLPRYSLERKERLNVNGFVAVAIDKDKGSQGALKWAIDHLLQRGHTIFLIHVKLRSPSNSSQKMSLKSDSESSVKELFLPFRCFCTRKDIQCKDVVLEDTDVAKAIIEYAANTAIENIVVGASAKSGFLRHATDVPGSVVKGAPDFCNVFVISKGKIQSMRSASRPAPPVTALRGQLAQQSSAKSDMPDFSVSHSASARGNLFQTSFLLPNMPVVSLFSMKLMLNFLAASLDKPPLDLPSKSQDEADFMSDEENVVGSRSPFTRKGYNYKASYGDLSMQDSDISYVSSGRPSIDRIFPSLYDSQDMGGRATPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRMSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKKSYLWFVMQAIELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAFDALAQNDIRYRKYTIEEIEEATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGTFENILDPAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRIIAEETMHPTLMGDISPSRSSSQVSFQLGAMASSPQSYNSSRNPSANF 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37623867 37628729 + ClCG05G026370.1 Cla05g02642 274132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02642 821 Pfam Universal stress protein family 21 133 IPR006016 -
Cla05g02642 821 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 818 - -
Cla05g02642 821 Coils Coil 432 484 - -
Cla05g02642 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 153 - -
Cla05g02642 821 SUPERFAMILY Protein kinase-like (PK-like) 489 764 IPR011009 -
Cla05g02642 821 Coils Coil 356 383 - -
Cla05g02642 821 Pfam Protein kinase domain 507 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02642 821 Gene3D HUPs 20 153 IPR014729 -
Cla05g02642 821 SMART serkin_6 506 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02642 821 ProSiteProfiles Protein kinase domain profile. 506 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02642 821 Gene3D Phosphorylase Kinase; domain 1 484 578 - -
Cla05g02642 821 CDD STK_N 20 156 - -
Cla05g02642 821 Gene3D Transferase(Phosphotransferase) domain 1 579 782 - -
Cla05g02642 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Cla05g02642 821 PANTHER OS02G0152300 PROTEIN 12 818 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02642 Cla-Chr5:37623867 Cla08g01256 Cla-Chr8:25473806 0 dispersed
Cla05g02642 Cla-Chr5:37623867 Cla09g00073 Cla-Chr9:688045 2.77E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80603 PF00069 Pkinase 5.90E-39 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02642 - - csv:105435028 1264.21