Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02645 ATGGCGCCGGGATTGGGGTTTTTATGTCGGTGGGGTAAAGAGAAAGACTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTAGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTGAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTAACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGGGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAGCTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCACCCCTCATCCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTCTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAGCCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGTGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGGCCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTTCTAATTAAGGCAGAGGTCGCTAAATGGAGCCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGTAAGGACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCATTCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTTGTGAACCGGGATGAAAATTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAGGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATTCTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTTGTTCCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTAAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGTTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGTGTCCATCTGTAGAGGTGCGTCAGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTCGTCTCTGCGCCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCACTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTTCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.39 MAPGLGFLCRWGKEKDSQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVASIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCLGCLWIKYKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRGHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVSICRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37663840 37667629 + ClCG05G026400.1 Cla05g02645 274135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02645 695 PANTHER - 13 695 - -
Cla05g02645 695 Pfam Glycosyl transferase family group 2 324 530 IPR001173 -
Cla05g02645 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Cla05g02645 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Cla05g02645 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02645 - - - csv:101217415 1322.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02645 Cla-Chr5:37663840 Cla09g01834 Cla-Chr9:36014918 0 dispersed
Cla05g02645 Cla-Chr5:37663840 Cla05g02654 Cla-Chr5:37746983 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01730 . 220 382 REM Transcription Factor Family AT1G49480 70.6 9.1e-57 217.2
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla09g01730 . 220 382 REM Transcription Factor Family AT1G49480 70.6 9.1e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38