Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02646 | ATGAAGTTTCTTGAAAAGCAATGTCTCGTGTATACGTTGGGAATTTGGATCCAAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGACTTTGATGACCCCAGAGATGCACGGGATGCAATCCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCCCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGGGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGCTACGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGCGGCGGCGGCGGCGGTTCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGACGTAGCTTTAGCAGATCACCTCCATACCGTGAAATGGTGTAAAGGACCGGCGTCGGAGCAGGAGCTGAGGACCACCAACTTCTCAACTTGCCTTAGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCCCAGCTCTGGGATCTTCAATTTGAAACGTTGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGCAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCGATCGCCAAAGATGTCGTCTCCTCCAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCTCCAATTACTCTCAAGCAAAGCAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCGGACTTTTCTGAAGAACCAGACGATTAA | 2781 | 45.34 | MKFLEKQCLVYTLGIWIQGSLSASLKMNFVVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGSGRRRSRSPRYRRSPRVTVPVEDLQDAAACHLVDVALADHLHTVKWCKGPASEQELRTTNFSTCLSVVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAQLWDLQFETLFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD | 926 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37669363 | 37682852 | - | ClCG05G026410.2 | Cla05g02646 | 274136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02646 | 926 | Pfam | Cyclic nucleotide-binding domain | 710 | 797 | IPR000595 | - | |
Cla05g02646 | 926 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 686 | 769 | IPR000595 | - | |
Cla05g02646 | 926 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 87 | IPR035979 | GO:0003676 | |
Cla05g02646 | 926 | Gene3D | - | 322 | 612 | - | - | |
Cla05g02646 | 926 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED | 260 | 923 | - | - | |
Cla05g02646 | 926 | SUPERFAMILY | cAMP-binding domain-like | 616 | 808 | IPR018490 | - | |
Cla05g02646 | 926 | Gene3D | - | 26 | 90 | IPR012677 | - | |
Cla05g02646 | 926 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 260 | 923 | - | - | |
Cla05g02646 | 926 | SMART | cnmp_10 | 686 | 817 | IPR000595 | - | |
Cla05g02646 | 926 | Pfam | Ion transport protein | 305 | 613 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cla05g02646 | 926 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 35 | 61 | IPR000504 | GO:0003723 | |
Cla05g02646 | 926 | MobiDBLite | consensus disorder prediction | 906 | 926 | - | - | |
Cla05g02646 | 926 | MobiDBLite | consensus disorder prediction | 853 | 880 | - | - | |
Cla05g02646 | 926 | SMART | c2hcfinal6 | 92 | 108 | IPR001878 | GO:0003676|GO:0008270 | |
Cla05g02646 | 926 | CDD | CAP_ED | 686 | 817 | IPR000595 | - | |
Cla05g02646 | 926 | Gene3D | Helix hairpin bin | 614 | 677 | - | - | |
Cla05g02646 | 926 | ProSiteProfiles | Zinc finger CCHC-type profile. | 92 | 107 | IPR001878 | GO:0003676|GO:0008270 | |
Cla05g02646 | 926 | MobiDBLite | consensus disorder prediction | 66 | 87 | - | - | |
Cla05g02646 | 926 | SUPERFAMILY | Retrovirus zinc finger-like domains | 72 | 112 | IPR036875 | GO:0003676|GO:0008270 | |
Cla05g02646 | 926 | MobiDBLite | consensus disorder prediction | 107 | 131 | - | - | |
Cla05g02646 | 926 | SUPERFAMILY | Voltage-gated potassium channels | 301 | 608 | - | - | |
Cla05g02646 | 926 | Pfam | Zinc knuckle | 92 | 107 | IPR001878 | GO:0003676|GO:0008270 | |
Cla05g02646 | 926 | Gene3D | - | 91 | 141 | - | - | |
Cla05g02646 | 926 | Gene3D | Jelly Rolls | 684 | 804 | IPR014710 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02528 | Cla-Chr5:36670102 | Cla05g02646 | Cla-Chr5:37669363 | 2.85E-29 | dispersed | |
Cla05g02646 | Cla-Chr5:37669363 | Cla06g01285 | Cla-Chr6:26208231 | 0 | dispersed | |
Cla05g02646 | Cla-Chr5:37669363 | Cla10g01367 | Cla-Chr10:28734213 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02646 | K05391 | - | csv:101211072 | 1218.37 |