Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02646 ATGAAGTTTCTTGAAAAGCAATGTCTCGTGTATACGTTGGGAATTTGGATCCAAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGACTTTGATGACCCCAGAGATGCACGGGATGCAATCCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCCCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGGGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGCTACGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGCGGCGGCGGCGGCGGTTCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGACGTAGCTTTAGCAGATCACCTCCATACCGTGAAATGGTGTAAAGGACCGGCGTCGGAGCAGGAGCTGAGGACCACCAACTTCTCAACTTGCCTTAGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCCCAGCTCTGGGATCTTCAATTTGAAACGTTGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGCAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCGATCGCCAAAGATGTCGTCTCCTCCAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCTCCAATTACTCTCAAGCAAAGCAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCGGACTTTTCTGAAGAACCAGACGATTAA 2781 45.34 MKFLEKQCLVYTLGIWIQGSLSASLKMNFVVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGSGRRRSRSPRYRRSPRVTVPVEDLQDAAACHLVDVALADHLHTVKWCKGPASEQELRTTNFSTCLSVVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAQLWDLQFETLFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37669363 37682852 - ClCG05G026410.2 Cla05g02646 274136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02646 926 Pfam Cyclic nucleotide-binding domain 710 797 IPR000595 -
Cla05g02646 926 ProSiteProfiles cAMP/cGMP binding motif profile. 686 769 IPR000595 -
Cla05g02646 926 SUPERFAMILY RNA-binding domain, RBD 35 87 IPR035979 GO:0003676
Cla05g02646 926 Gene3D - 322 612 - -
Cla05g02646 926 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 260 923 - -
Cla05g02646 926 SUPERFAMILY cAMP-binding domain-like 616 808 IPR018490 -
Cla05g02646 926 Gene3D - 26 90 IPR012677 -
Cla05g02646 926 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 260 923 - -
Cla05g02646 926 SMART cnmp_10 686 817 IPR000595 -
Cla05g02646 926 Pfam Ion transport protein 305 613 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla05g02646 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 61 IPR000504 GO:0003723
Cla05g02646 926 MobiDBLite consensus disorder prediction 906 926 - -
Cla05g02646 926 MobiDBLite consensus disorder prediction 853 880 - -
Cla05g02646 926 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Cla05g02646 926 CDD CAP_ED 686 817 IPR000595 -
Cla05g02646 926 Gene3D Helix hairpin bin 614 677 - -
Cla05g02646 926 ProSiteProfiles Zinc finger CCHC-type profile. 92 107 IPR001878 GO:0003676|GO:0008270
Cla05g02646 926 MobiDBLite consensus disorder prediction 66 87 - -
Cla05g02646 926 SUPERFAMILY Retrovirus zinc finger-like domains 72 112 IPR036875 GO:0003676|GO:0008270
Cla05g02646 926 MobiDBLite consensus disorder prediction 107 131 - -
Cla05g02646 926 SUPERFAMILY Voltage-gated potassium channels 301 608 - -
Cla05g02646 926 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676|GO:0008270
Cla05g02646 926 Gene3D - 91 141 - -
Cla05g02646 926 Gene3D Jelly Rolls 684 804 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02528 Cla-Chr5:36670102 Cla05g02646 Cla-Chr5:37669363 2.85E-29 dispersed
Cla05g02646 Cla-Chr5:37669363 Cla06g01285 Cla-Chr6:26208231 0 dispersed
Cla05g02646 Cla-Chr5:37669363 Cla10g01367 Cla-Chr10:28734213 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02646 K05391 - csv:101211072 1218.37