Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02650 ATGGCGGTCGATCTGATGAGCTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAACCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTGCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTTCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTGGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAAAGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGTGTAGCTTTAGTTTTTGAGTCAACTTGA 1014 50.89 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSCGSSAHLSFPQNQAMNLTPTSFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGKSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37719643 37722075 + ClCG05G026460.1 Cla05g02650 274140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02650 337 MobiDBLite consensus disorder prediction 228 258 - -
Cla05g02650 337 Pfam Plant zinc cluster domain 220 271 IPR018872 -
Cla05g02650 337 SUPERFAMILY WRKY DNA-binding domain 271 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02650 337 Pfam WRKY DNA -binding domain 275 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02650 337 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 336 IPR044810 GO:0003700
Cla05g02650 337 Gene3D WRKY domain 258 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02650 337 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 336 - -
Cla05g02650 337 ProSiteProfiles WRKY domain profile. 268 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02650 337 SMART WRKY_cls 273 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02650 Cla-Chr5:37719643 Cla06g01369 Cla-Chr6:27212737 3.20E-27 dispersed
Cla05g02650 Cla-Chr5:37719643 Cla01g01663 Cla-Chr1:31522879 4.55E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61195 PF10533 Plant_zn_clust 3.80E-19 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02650 - - bhj:120087087 548.125