Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02655 ATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACAATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGTTTAAAAAATAGGAAGCGGGTCTTATAG 1191 42.23 MGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGLKNRKRVL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37753717 37759959 - ClCG05G026510.2 Cla05g02655 274145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02655 396 MobiDBLite consensus disorder prediction 165 179 - -
Cla05g02655 396 SMART finulus 236 286 IPR011598 GO:0046983
Cla05g02655 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 295 IPR036638 GO:0046983
Cla05g02655 396 MobiDBLite consensus disorder prediction 153 240 - -
Cla05g02655 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 389 IPR024097 GO:0006355
Cla05g02655 396 Gene3D - 227 300 IPR036638 GO:0046983
Cla05g02655 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Cla05g02655 396 CDD bHLH_AtBPE_like 220 305 - -
Cla05g02655 396 MobiDBLite consensus disorder prediction 180 210 - -
Cla05g02655 396 Pfam Helix-loop-helix DNA-binding domain 233 281 IPR011598 GO:0046983
Cla05g02655 396 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02367 Cla-Chr5:35260244 Cla05g02655 Cla-Chr5:37753717 2.62E-55 dispersed
Cla05g02655 Cla-Chr5:37753717 Cla08g01642 Cla-Chr8:29047749 6.75E-63 dispersed
Cla06g01221 Cla-Chr6:25394004 Cla05g02655 Cla-Chr5:37753717 1.85E-22 dispersed
Cla05g02655 Cla-Chr5:37753717 Cla02g00509 Cla-Chr2:5100515 1.84E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61196 PF00010 HLH 4.10E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02655 - - csv:101203971 712.22