Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02655 | ATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACAATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGTTTAAAAAATAGGAAGCGGGTCTTATAG | 1191 | 42.23 | MGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGLKNRKRVL | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37753717 | 37759959 | - | ClCG05G026510.2 | Cla05g02655 | 274145 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02655 | 396 | MobiDBLite | consensus disorder prediction | 165 | 179 | - | - | |
Cla05g02655 | 396 | SMART | finulus | 236 | 286 | IPR011598 | GO:0046983 | |
Cla05g02655 | 396 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 228 | 295 | IPR036638 | GO:0046983 | |
Cla05g02655 | 396 | MobiDBLite | consensus disorder prediction | 153 | 240 | - | - | |
Cla05g02655 | 396 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 23 | 389 | IPR024097 | GO:0006355 | |
Cla05g02655 | 396 | Gene3D | - | 227 | 300 | IPR036638 | GO:0046983 | |
Cla05g02655 | 396 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 230 | 280 | IPR011598 | GO:0046983 | |
Cla05g02655 | 396 | CDD | bHLH_AtBPE_like | 220 | 305 | - | - | |
Cla05g02655 | 396 | MobiDBLite | consensus disorder prediction | 180 | 210 | - | - | |
Cla05g02655 | 396 | Pfam | Helix-loop-helix DNA-binding domain | 233 | 281 | IPR011598 | GO:0046983 | |
Cla05g02655 | 396 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 23 | 389 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02367 | Cla-Chr5:35260244 | Cla05g02655 | Cla-Chr5:37753717 | 2.62E-55 | dispersed | |
Cla05g02655 | Cla-Chr5:37753717 | Cla08g01642 | Cla-Chr8:29047749 | 6.75E-63 | dispersed | |
Cla06g01221 | Cla-Chr6:25394004 | Cla05g02655 | Cla-Chr5:37753717 | 1.85E-22 | dispersed | |
Cla05g02655 | Cla-Chr5:37753717 | Cla02g00509 | Cla-Chr2:5100515 | 1.84E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61196 | PF00010 | HLH | 4.10E-06 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02655 | - | - | csv:101203971 | 712.22 |