Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02656 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTACTCCAGTATCCTACTGAGGATCCTAACAAGGAGTCTCATATTGCAAGTTGTTATTCTGAAATTCAACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAAAACAGAACATTGATAAAATTGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGTGGTATTCAACAACAACCCGATATTGGATCCAAGTGCAATGGTAATGGTGAATTTTTCAAGCAAGTACAAGGCTCACTTCCCCAATGCTTCCTCTGCTGTGAGCAGCAGCAGCAGCTCAAGGGAAACAAGTCCTGATAAGTGA 1515 42.44 MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPNKESHIASCYSEIQQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTNTIKHKDPKQNIDKIDDPSKISNNLDRKVVFNNNPILDPSAMVMVNFSSKYKAHFPNASSAVSSSSSSRETSPDK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37771031 37773885 - ClCG05G026520.2 Cla05g02656 274146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02656 504 CDD AP2 340 401 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 MobiDBLite consensus disorder prediction 1 20 - -
Cla05g02656 504 MobiDBLite consensus disorder prediction 195 212 - -
Cla05g02656 504 CDD AP2 241 305 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 ProSiteProfiles AP2/ERF domain profile. 242 305 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 MobiDBLite consensus disorder prediction 195 229 - -
Cla05g02656 504 SUPERFAMILY DNA-binding domain 340 400 IPR016177 GO:0003677
Cla05g02656 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 31 502 - -
Cla05g02656 504 SMART rav1_2 341 405 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 SMART rav1_2 242 311 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 PRINTS Ethylene responsive element binding protein signature 381 401 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 MobiDBLite consensus disorder prediction 427 449 - -
Cla05g02656 504 SUPERFAMILY DNA-binding domain 241 306 IPR016177 GO:0003677
Cla05g02656 504 MobiDBLite consensus disorder prediction 485 504 - -
Cla05g02656 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 502 - -
Cla05g02656 504 Pfam AP2 domain 341 391 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 Pfam AP2 domain 242 297 IPR001471 GO:0003700|GO:0006355
Cla05g02656 504 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700|GO:0006355
Cla05g02656 504 Gene3D AP2/ERF domain 241 307 IPR036955 GO:0003700|GO:0006355
Cla05g02656 504 MobiDBLite consensus disorder prediction 422 449 - -
Cla05g02656 504 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01741 Cla-Chr1:32305915 Cla05g02656 Cla-Chr5:37771031 3.07E-152 dispersed
Cla05g02656 Cla-Chr5:37771031 Cla07g01336 Cla-Chr7:30575443 3.94E-124 dispersed
Cla09g00803 Cla-Chr9:8211167 Cla05g02656 Cla-Chr5:37771031 1.78E-06 dispersed
Cla05g02656 Cla-Chr5:37771031 Cla08g01641 Cla-Chr8:29034235 1.85E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61197 PF00847 AP2 3.20E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02656 K09285 - csv:101212143 763.066