Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02664 ATGCCGATGTACCAGCCTTCCTGTCGGAGAAGAGAGCCCGATTCGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGTGGGGGTGGCGGTGGAGGCGGTGGGTTAATTTGCGAGGGTGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTCAGAATATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGTCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTAACCAACTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGAGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGTCAAGTTGTAGCTTCAAATTCGGCAAAGAACACTGTGGAAGGCAACGGTGGTGTTGCTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACACGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGATACCAAAATCAACTGCACAAGATTGATTGAAACATTGCTCGATGGGGATGATTGTGGAGCGAAAACTGTCTCGAGCTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAAGTTGCTAAAAGTTCTGTGCTCCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATACCGCAATTGATCGAAATTCTCCCGAATTTCGACCCTGAGTGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTCGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGTTTAGCAGCCAAGCTTCTTTTGGTGATTCAGAGCGGTTGCAACCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTATTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 46.74 MPMYQPSCRRREPDSELGLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGMTEKLDLKEIVEELQNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLNQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVASNSAKNTVEGNGGVALISSLLGPFTSHTVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLDGDDCGAKTVSSLSLLVGLLRLIKEKKHPNGVLAGLKLLKVLCSQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37828138 37829502 - ClCG05G026615.1 Cla05g02664 274154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02664 454 SUPERFAMILY ARM repeat 145 437 IPR016024 -
Cla05g02664 454 PANTHER WDSAM1 PROTEIN 43 453 IPR045185 GO:0061630
Cla05g02664 454 SUPERFAMILY RING/U-box 67 141 - -
Cla05g02664 454 CDD RING-Ubox_PUB 75 117 IPR045210 -
Cla05g02664 454 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Cla05g02664 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Cla05g02664 454 MobiDBLite consensus disorder prediction 1 22 - -
Cla05g02664 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 43 453 - -
Cla05g02664 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Cla05g02664 454 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Cla05g02664 454 Gene3D - 145 448 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02664 Cla-Chr5:37828138 Cla08g01635 Cla-Chr8:28938900 0 dispersed
Cla08g00568 Cla-Chr8:17266718 Cla05g02664 Cla-Chr5:37828138 8.01E-11 dispersed
Cla05g02664 Cla-Chr5:37828138 Cla01g01528 Cla-Chr1:29819686 3.08E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02664 - - csv:101223113 801.201