Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02669 ATGAGCAGTTTCTCCTTGAAAAGCTTCTCGTGGAGGAAATCGAAATCCTCGAAATCCTCGAAATCGGATTCCTCCCATTCCTTTTCGTCGTCGTCGTCGTCGTCGGAACAGCGGTTTCTGACGGAAAATATGGGAACTCTGAGAGTGCCGGAGACCGTTCCTTCTCCCGCTGAGGATTGTGATAGGCTCAAGAAAGCTTTTGATGGATGGGGAACGGATGAGAAGACATTGATAAGGATATTAGGACAAAGAAATGCAGCTCAAAGGAAGGCAATCAGAGAGACTTATCTCGAGCTATACAACGAGTCATTAATTGATCGCATCAACGCTGAACTCTCTGGTGATTTTAGAAAAGCGGCGATTTTGTGGGCATATGATCCTGCAGAGAGGGATGCAAGATTGGCAAATGAAGCTTTGAGGTCATATAAGAAAGGCATCCATGAGCTTCAAGTATTAGTGGAGATAGCCTGTGCCACATCTCCTTACCATCTGATGGCAGTAAGGCAGGCCTACTGTTCTCTCTTTGATTGCTCGCTTGAAGAAGACATTTTCTCCACAATCTCCATGCCTCTTAGAAAGCTTCTTGTTGGTGTGGTGAGTTCCTTCAGGCATGATAAAGAGGTGGTGGACAGTATTGTTGCTGATTCAGAAGCCGATTTATTACACGATGCTATCAAATCGAAGCAATTATACCGCAGTGGCGTCATTTGGATACTCAGCACAAGGAATTTCTTTCAGCTTAGAGCAACCTTTGCATGCTATAAGCAAAAGTATGGAAACCCTATTGACCAGGACATTGTGAAATGTGGAACTAGTGATTTAGAATCTCTCTTCAAAATGGCGATTTGGTGCATTGACACTCCTGAAAAACACTTTGCTAGGCTTTCACCTTACATGGAAAGTTTCGATTGTGAAACATTGGTCCAGGTAATCAACAAGGCCATTGTTGGGCTTGGGACAGATGAAGATTCTCTAACCAGAGCCATTGTATGTCGAGCTGAGATAGACACAATGAAAATTAGAGAAGAGTATTCCAACATGTTCAAAGGCAAGCTCGATGACGACGTTATCGGCGACACATCTGGAGACTACAAGGACATGTTGATGATCTTGCTTGGAGCTAAAGTTTGA 1131 43.77 MSSFSLKSFSWRKSKSSKSSKSDSSHSFSSSSSSSEQRFLTENMGTLRVPETVPSPAEDCDRLKKAFDGWGTDEKTLIRILGQRNAAQRKAIRETYLELYNESLIDRINAELSGDFRKAAILWAYDPAERDARLANEALRSYKKGIHELQVLVEIACATSPYHLMAVRQAYCSLFDCSLEEDIFSTISMPLRKLLVGVVSSFRHDKEVVDSIVADSEADLLHDAIKSKQLYRSGVIWILSTRNFFQLRATFACYKQKYGNPIDQDIVKCGTSDLESLFKMAIWCIDTPEKHFARLSPYMESFDCETLVQVINKAIVGLGTDEDSLTRAIVCRAEIDTMKIREEYSNMFKGKLDDDVIGDTSGDYKDMLMILLGAKV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37861787 37866279 - ClCG05G026660.2 Cla05g02669 274159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02669 376 ProSitePatterns Annexin repeat signature. 319 371 IPR018252 GO:0005509|GO:0005544
Cla05g02669 376 PANTHER ANNEXIN 50 376 - -
Cla05g02669 376 ProSiteProfiles Annexin repeat profile. 126 200 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 SMART annex3 150 198 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 SMART annex3 71 123 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 SMART annex3 235 281 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 SMART annex3 319 371 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 MobiDBLite consensus disorder prediction 1 42 - -
Cla05g02669 376 Gene3D Annexin 126 199 IPR037104 GO:0005509|GO:0005544
Cla05g02669 376 PANTHER ANNEXIN D3 50 376 - -
Cla05g02669 376 Gene3D Annexin 38 125 IPR037104 GO:0005509|GO:0005544
Cla05g02669 376 ProSiteProfiles Annexin repeat profile. 210 283 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 MobiDBLite consensus disorder prediction 1 56 - -
Cla05g02669 376 ProSiteProfiles Annexin repeat profile. 54 125 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 Pfam Annexin 309 370 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 Pfam Annexin 150 197 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 Pfam Annexin 59 121 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 Pfam Annexin 217 278 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 PRINTS Annexin family signature 108 124 IPR001464 GO:0005509|GO:0005544
Cla05g02669 376 PRINTS Annexin family signature 315 335 IPR001464 GO:0005509|GO:0005544
Cla05g02669 376 PRINTS Annexin family signature 68 90 IPR001464 GO:0005509|GO:0005544
Cla05g02669 376 PRINTS Annexin family signature 359 372 IPR001464 GO:0005509|GO:0005544
Cla05g02669 376 ProSiteProfiles Annexin repeat profile. 302 373 IPR018502 GO:0005509|GO:0005544
Cla05g02669 376 Gene3D Annexin 303 374 IPR037104 GO:0005509|GO:0005544
Cla05g02669 376 PRINTS Plant annexin signature 165 179 IPR009118 -
Cla05g02669 376 PRINTS Plant annexin signature 272 290 IPR009118 -
Cla05g02669 376 PRINTS Plant annexin signature 207 227 IPR009118 -
Cla05g02669 376 Gene3D Annexin 212 286 IPR037104 GO:0005509|GO:0005544
Cla05g02669 376 SUPERFAMILY Annexin 45 373 IPR037104 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02669 K17098 ANNAT; annexin D - csv:101221769 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02669 Cla-Chr5:37861787 Cla09g01506 Cla-Chr9:29333846 2.48E-81 dispersed
Cla05g02669 Cla-Chr5:37861787 Cla05g02670 Cla-Chr5:37876542 2.59E-41 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004951 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 0 33