Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02670 ATGGCGGATTCTGCCGTGGAAGTTCTCACTCGAGCTCTCTCAGGGCATGGAATAAATGAGAAGGCAATGATAGATACATTGGGAAAATGGGATCATGAAGAGAAGAAATTGTTCAGAAAGAAAAGTAGCCATTTTTTCAGTGAAGATGAACGCTCCTTTGAGCGATGGGAAGAACATGGCATGAGACTTCTCAAGCATGAATTTATGCGCTTTAAGAATGCTGTGGTGCTATGGACAACACATCCATGGGAAAGAGATGCGCGTTTGGTAAAGGAAGCATTGAGCAAAGGGCATCATAGCCAAAACATAAACATTCTAATAGAAGTGGCTTGTACTAGAACTTCTGATGAGCTCTTGGGAGCAAGGAAGGCTTACCATTCCCTCTTTGATCATTCCATTGAAGAAGATGTTGCCAGCCACATTAGTGGCCCTGAGCGCAAGCTTTTGGTTGCATTAATGAGTGCATATAGATACGAAGGGCCAAAGTATAAGGAGGAGACAGCAAAATCTGAAGCAAAAAAGCTTGCTCATTCAATTAAGGAGGCAGCCAGCAAAAAGAGCAGCCTCATTGAAGATGAAGAGGTTGTGAGAATACTCTCAACAAGAAGCAAACACTTTCTTCATGCCCTTTCCAAACACTACAAGGAAATCTCAGCAGGTCGCTCCATTGATGAGGATCTTCATGGTGACTTGAGGCTTCAAGAGGCAGTGTTGTGCTTAGCCAATCCTATTAAGTATTTCACTCAGATTCTGAATGTGTCATTAAAAGTCGACGCGGACAAGAAAATAAAAAAGGTATTGACTCGAATCGTCGTCACGAGAGCCGATATAGACATGAAGGAGATCAAAGTTGAGTTCAAAAATCAGTTTGGGGTTTCATTGGCTGAGAAAATTGGGTCTGTGTGCAATGGTAGCTACAAAGATTTCTTGCTCACTTTGCTGGCAAGATCAGACTAA 957 42.42 MADSAVEVLTRALSGHGINEKAMIDTLGKWDHEEKKLFRKKSSHFFSEDERSFERWEEHGMRLLKHEFMRFKNAVVLWTTHPWERDARLVKEALSKGHHSQNINILIEVACTRTSDELLGARKAYHSLFDHSIEEDVASHISGPERKLLVALMSAYRYEGPKYKEETAKSEAKKLAHSIKEAASKKSSLIEDEEVVRILSTRSKHFLHALSKHYKEISAGRSIDEDLHGDLRLQEAVLCLANPIKYFTQILNVSLKVDADKKIKKVLTRIVVTRADIDMKEIKVEFKNQFGVSLAEKIGSVCNGSYKDFLLTLLARSD 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37876542 37879499 + ClCG05G026670.2 Cla05g02670 274160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02670 318 Gene3D Annexin 166 241 IPR037104 GO:0005509|GO:0005544
Cla05g02670 318 Gene3D Annexin 81 153 IPR037104 GO:0005509|GO:0005544
Cla05g02670 318 Gene3D Annexin 243 315 IPR037104 GO:0005509|GO:0005544
Cla05g02670 318 PRINTS Annexin family signature 14 36 IPR001464 GO:0005509|GO:0005544
Cla05g02670 318 PRINTS Annexin family signature 257 277 IPR001464 GO:0005509|GO:0005544
Cla05g02670 318 PRINTS Annexin family signature 285 300 IPR001464 GO:0005509|GO:0005544
Cla05g02670 318 PANTHER ANNEXIN 4 317 - -
Cla05g02670 318 ProSiteProfiles Annexin repeat profile. 242 315 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 SMART annex3 264 313 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 SMART annex3 191 240 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 Pfam Annexin 86 152 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 Pfam Annexin 264 313 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 ProSiteProfiles Annexin repeat profile. 81 154 IPR018502 GO:0005509|GO:0005544
Cla05g02670 318 PANTHER ANNEXIN D4 4 317 - -
Cla05g02670 318 SUPERFAMILY Annexin 5 316 IPR037104 GO:0005509|GO:0005544
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00642 Cla05g02670 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02670 Cla-Chr5:37876542 Cla09g01506 Cla-Chr9:29333846 4.88E-52 dispersed
Cla05g02669 Cla-Chr5:37861787 Cla05g02670 Cla-Chr5:37876542 2.59E-41 tandem
Cla05g02670 Cla-Chr5:37876542 Cla05g02671 Cla-Chr5:37880590 2.91E-31 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02670 K17098 - csv:101222238 600.897