Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02675 ATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGAGAACAAGCTCGGACATGAATTGTATTTATCTTGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCCGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1926 44.18 MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPFIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTENKLGHELYLSWDQSVRIFLGLFGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERLDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37929342 37942094 + ClCG05G026730.2 Cla05g02675 274165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02675 641 ProSiteProfiles C2 domain profile. 467 583 IPR000008 -
Cla05g02675 641 Pfam Putative GTPase activating protein for Arf 286 400 IPR001164 GO:0005096
Cla05g02675 641 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 282 641 - -
Cla05g02675 641 SUPERFAMILY RING/U-box 49 96 - -
Cla05g02675 641 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 282 641 IPR044518 GO:0005096|GO:0005543
Cla05g02675 641 Gene3D Arf GTPase activating protein 282 406 IPR038508 -
Cla05g02675 641 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cla05g02675 641 CDD RING-HC_SIAHs 55 93 - -
Cla05g02675 641 SUPERFAMILY ArfGap/RecO-like zinc finger 285 400 IPR037278 -
Cla05g02675 641 CDD Sina 132 259 - -
Cla05g02675 641 Pfam C2 domain 486 576 IPR000008 -
Cla05g02675 641 Gene3D C2 domain 484 638 IPR035892 -
Cla05g02675 641 CDD ArfGap 288 394 - -
Cla05g02675 641 CDD C2_ArfGAP 484 628 - -
Cla05g02675 641 Pfam Seven in absentia protein family 116 259 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla05g02675 641 SUPERFAMILY TRAF domain-like 114 259 - -
Cla05g02675 641 PRINTS HIV Rev interacting protein signature 316 333 IPR001164 GO:0005096
Cla05g02675 641 PRINTS HIV Rev interacting protein signature 337 358 IPR001164 GO:0005096
Cla05g02675 641 PRINTS HIV Rev interacting protein signature 297 316 IPR001164 GO:0005096
Cla05g02675 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cla05g02675 641 ProSiteProfiles ARF GTPase-activating proteins domain profile. 285 399 IPR001164 GO:0005096
Cla05g02675 641 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 578 IPR035892 -
Cla05g02675 641 SMART arf_gap_3 285 406 IPR001164 GO:0005096
Cla05g02675 641 MobiDBLite consensus disorder prediction 1 44 - -
Cla05g02675 641 SMART C2_3c 486 581 IPR000008 -
Cla05g02675 641 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 127 259 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00758 Cla-Chr1:8847181 Cla05g02675 Cla-Chr5:37929342 8.41E-172 dispersed
Cla01g02455 Cla-Chr1:38256076 Cla05g02675 Cla-Chr5:37929342 2.84E-109 dispersed
Cla05g02675 Cla-Chr5:37929342 Cla06g00118 Cla-Chr6:1278185 3.95E-124 dispersed
Cla07g00578 Cla-Chr7:9925592 Cla05g02675 Cla-Chr5:37929342 4.80E-31 dispersed
Cla05g02675 Cla-Chr5:37929342 Cla03g00588 Cla-Chr3:6693553 5.95E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02675 K12486 - csv:101221541 683.33