Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02693 ATGCCAGGTTTCGCTTCAGAGATGTCCATTTGTAACCAACTTATTACAGAGAACCTCAAAGTTTATGCCATGACTGATGTCAGTCCAAGGACTGATATTTCCACTGATGTCGACACCGATGAAAAAAACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGTAAGTGTGTTTTCTTTTAGCTATCTTTTCAGTTTGAAGTTGCATAGCATCAGCTACTTCACATTTGCAGGGGCCATAGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAAATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATATTGGCTCATTATGATGAGGTTTTTCGGCTAAAGGGGGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCTTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGTGTTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATATGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAATTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTTTGGCTTGCTCGCCCAAAAGAGTGA 1134 44.89 MPGFASEMSICNQLITENLKVYAMTDVSPRTDISTDVDTDEKNQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNVSVFSFSYLFSLKLHSISYFTFAGAIAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEVLQQSLAETLSSGSLGSSNMSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38147657 38154617 + ClCG05G026930.2 Cla05g02693 274183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02693 377 Pfam Basic region leucine zipper 65 111 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 ProSiteProfiles DOG1 domain profile. 157 374 IPR025422 GO:0006351|GO:0043565
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA9 155 377 - -
Cla05g02693 377 Coils Coil 88 115 - -
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 155 377 - -
Cla05g02693 377 Gene3D - 68 120 - -
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA9 14 135 - -
Cla05g02693 377 SUPERFAMILY Leucine zipper domain 69 112 IPR046347 GO:0003700|GO:0006355
Cla05g02693 377 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 67 111 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 Coils Coil 168 188 - -
Cla05g02693 377 CDD bZIP_HBP1b-like 69 121 - -
Cla05g02693 377 SMART brlzneu 65 128 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 Pfam Seed dormancy control 174 249 IPR025422 GO:0006351|GO:0043565
Cla05g02693 377 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 14 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02151 Cla-Chr2:36609167 Cla05g02693 Cla-Chr5:38147657 1.02E-114 dispersed
Cla05g02693 Cla-Chr5:38147657 Cla08g01072 Cla-Chr8:23407805 2.44E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61204 PF14144 DOG1 6.20E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02693 K14431 - csv:101216885 577.4