Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02693 ATGCCAGGTTTCGCTTCAGAGATGTCCATTTGTAACCAACTTATTACAGAGAACCTCAAAGTTTATGCCATGACTGATGTCAGTCCAAGGACTGATATTTCCACTGATGTCGACACCGATGAAAAAAACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGTAAGTGTGTTTTCTTTTAGCTATCTTTTCAGTTTGAAGTTGCATAGCATCAGCTACTTCACATTTGCAGGGGCCATAGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAAATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATATTGGCTCATTATGATGAGGTTTTTCGGCTAAAGGGGGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCTTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGTGTTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATATGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAATTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTTTGGCTTGCTCGCCCAAAAGAGTGA 1134 44.89 MPGFASEMSICNQLITENLKVYAMTDVSPRTDISTDVDTDEKNQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNVSVFSFSYLFSLKLHSISYFTFAGAIAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEVLQQSLAETLSSGSLGSSNMSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38147657 38154617 + ClCG05G026930.2 Cla05g02693 274183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02693 377 Pfam Basic region leucine zipper 65 111 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 ProSiteProfiles DOG1 domain profile. 157 374 IPR025422 GO:0006351|GO:0043565
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA9 155 377 - -
Cla05g02693 377 Coils Coil 88 115 - -
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 155 377 - -
Cla05g02693 377 Gene3D - 68 120 - -
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA9 14 135 - -
Cla05g02693 377 SUPERFAMILY Leucine zipper domain 69 112 IPR046347 GO:0003700|GO:0006355
Cla05g02693 377 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 67 111 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 Coils Coil 168 188 - -
Cla05g02693 377 CDD bZIP_HBP1b-like 69 121 - -
Cla05g02693 377 SMART brlzneu 65 128 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 Pfam Seed dormancy control 174 249 IPR025422 GO:0006351|GO:0043565
Cla05g02693 377 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Cla05g02693 377 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 14 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02693 K14431 TGA; transcription factor TGA - csv:101216885 577.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02151 Cla-Chr2:36609167 Cla05g02693 Cla-Chr5:38147657 1.02E-114 dispersed
Cla05g02693 Cla-Chr5:38147657 Cla08g01072 Cla-Chr8:23407805 2.44E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g978 . . . . . . Bma03g00419 . . Cmo04g01393 . . . . . . Cpe09g00455 . . . . . . . Cla05g02693 Cam05g2888 Cec05g2925 Cco05g2958 Clacu05g2894 Cmu05g2738 Cre05g2856 . . . . . . Chy10g01378 . Blo09g00369 Blo04g00388 Bda14g00422 . . . . . . . . . . . . Cpe01g01198 . . . . . . . . . . . . . . . Lsi04g00016 Csa05g02868 Chy03g00855 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000424 3 12 2 4 3 3 5 3 3 3 3 2 7 3 3 5 3 4 3 3 3 3 3 3 3 2 3 9 14 2 122
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61204 PF14144 DOG1 6.20E-33 No_clan Cla TF