Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02699 ATGGATCAATTTTCCAAAGACCTCGACAAGGAAATCTGCAACGCGGAAAAATTTGAGAGAGAAGAAGAAGACGACGACGGCGACGAGGAGCAAGAAGAGGGACAAGACGACTGGGACGATTGGAATGCAGACGAGGAAGAAGGAGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTATAATCACTGCGACACTCTGTTCAACCATTGCAACTCCGTCCACTATTTCGATTTTCACAGCATCAGAAGGGCTCTGGGTTTAGACTTCTATGGTTCCTTCAAAATTATCAACTACATACGATCTCAGGTAGCAGATAATAGGTGCTGGAGCTGTGGTCTCTCGTGTAAATCAAACCAGGATTTACAGAACCATTTACACAAAATTTTAAATCTCGATGACATAAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTACAGAAGACGAGGAGGATGATGATGAAATGACTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAAGAAAATGGAGTGGAAGATTGTAGTTCTACTTCACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGGCGAGATTGAGAATACTGTGAAAACCACGGAGACTTTGGGGTTGAAAGATGAGAAGCAGGAAGACATTCAATTTAAATTAGCCAGACGGAATTTTGATAGAAAGGATATAAAAAATGCAAATGAAAGTTACTTCGGTTCATATAGCTCTTTTGGCATACACAAAGAGATGTTAAGCGACAAGGTGCTATATTACCTCTCTGTCAGAATGGAAGCTTATATGGAGGCGATTTTGCAAAATCCATCTCTGTTCCACAATGCTGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTTTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGTGGAACAGGAAACAAACTAGAGATTGTGACATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGATAAGAACTTAGAGATTGCGCCTCACAGTGTTGATGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTACGAATCAATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACAGCCACAATTCTTGTTGCTGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTTAGAATGTCTTGTGTAGGGAAGGAACTTGTAAAAGATGCTGCCAACACTCCCATCGTTGATATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATCCTCCATACTTTCGATCTAGCAACCATGCATCCTGATGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCAAATTCACATGATCCTTCAAACTCAAATAGTGTTGAAGTTGAAGCATCTCGCTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAGCCGGTTGCTATAACATCTAGAAAGTCAAGAACCAACATATCAGCACCAGTAGGTAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGTCTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATCGCTGGTGATGGTAGGAAGCACCACTGGCCTGTACAGCTGTTCACACTAAGATAG 1884 42.36 MDQFSKDLDKEICNAEKFEREEEDDDGDEEQEEGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKYNHCDTLFNHCNSVHYFDFHSIRRALGLDFYGSFKIINYIRSQVADNRCWSCGLSCKSNQDLQNHLHKILNLDDIKALWDDDKYLKPFRQDDPLLYSFTEDEEDDDEMTRENLPFHPNQNKENGVEDCSSTSHGYLNAPSNLEGEIENTVKTTETLGLKDEKQEDIQFKLARRNFDRKDIKNANESYFGSYSSFGIHKEMLSDKVLYYLSVRMEAYMEAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLWWNRKQTRDCDMSSGTIEVVHGMVEELDKNLEIAPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVKDAANTPIVDIVDANDLVTSPAILHTFDLATMHPDEVDFTASTELEPNSHDPSNSNSVEVEASRCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPVAITSRKSRTNISAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38258671 38263343 + ClCG05G026980.2 Cla05g02699 274189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02699 627 CDD AdoMet_MTases 296 414 - -
Cla05g02699 627 Pfam C2H2 type zinc-finger (2 copies) 58 132 IPR041661 -
Cla05g02699 627 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 248 585 IPR025799 GO:0016274|GO:0018216
Cla05g02699 627 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 27 625 IPR025799 GO:0016274|GO:0018216
Cla05g02699 627 Coils Coil 1 21 - -
Cla05g02699 627 Gene3D Vaccinia Virus protein VP39 240 415 IPR029063 -
Cla05g02699 627 Gene3D - 418 618 - -
Cla05g02699 627 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Cla05g02699 627 MobiDBLite consensus disorder prediction 18 41 - -
Cla05g02699 627 Pfam Methyltransferase domain 296 411 IPR041698 -
Cla05g02699 627 SUPERFAMILY beta-beta-alpha zinc fingers 34 173 IPR036236 -
Cla05g02699 627 MobiDBLite consensus disorder prediction 1 41 - -
Cla05g02699 627 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 27 625 - -
Cla05g02699 627 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 565 IPR029063 -
Cla05g02699 627 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01517 Cla-Chr3:30773098 Cla05g02699 Cla-Chr5:38258671 1.35E-63 dispersed
Cla05g02699 Cla-Chr5:38258671 Cla06g01076 Cla-Chr6:23366813 7.18E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02699 K11436 - csv:101215999 1043.49