Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02700 ATGATGGCTTGTGCTTCACAGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAGTCACAGAGACTCTTCAATCAAAGTGCTTCCAATCTTGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCTGGTGGAATGGCACTCATTGCGGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATTAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCAGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGACAGAGCCATCCTCTTCGGCTGTAGCCACTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTGATGGCGGAACAAACACTGCAGACGTTCAATTTTCAGGATTGTGTCAGAATGGACTACATCTGGATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATAGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCTGACTGGGAGAATAGACTAGTGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCCACCGGTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTGTGAACGCTTTGTTAAGAAAGGTGGAAAAAGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATAGAGGATATTTTGAAGAAGAAGCCTCGTATGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCGCATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGTATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGGGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTAAGTGATTCCCTGGTGGCTAATAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3789 42.73 MMACASQALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTTEPSSSAVATSTVLMESVEETKPSATNSCHTDGGTNTADVQFSGLCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLVAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDCERFVKKGGKRVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRMASECNSKSLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAICNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38265307 38277187 - ClCG05G026990.2 Cla05g02700 274190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02700 1262 Coils Coil 510 534 - -
Cla05g02700 1262 Gene3D - 944 1137 - -
Cla05g02700 1262 MobiDBLite consensus disorder prediction 1124 1156 - -
Cla05g02700 1262 Gene3D - 661 849 - -
Cla05g02700 1262 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 245 1248 IPR028309 GO:0006357|GO:0051726
Cla05g02700 1262 SMART RB_A_2 658 859 IPR002720 GO:0005634|GO:0051726
Cla05g02700 1262 PANTHER BNACNNG22930D PROTEIN 245 1248 - -
Cla05g02700 1262 SMART DUF3452_2 327 476 IPR024599 -
Cla05g02700 1262 Pfam Retinoblastoma-associated protein A domain 658 859 IPR002720 GO:0005634|GO:0051726
Cla05g02700 1262 SUPERFAMILY Cyclin-like 666 861 IPR036915 -
Cla05g02700 1262 Pfam Retinoblastoma-associated protein B domain 983 1110 IPR002719 GO:0005634|GO:0051726
Cla05g02700 1262 SUPERFAMILY Cyclin-like 981 1150 IPR036915 -
Cla05g02700 1262 Gene3D - 437 595 - -
Cla05g02700 1262 MobiDBLite consensus disorder prediction 1125 1140 - -
Cla05g02700 1262 Coils Coil 571 591 - -
Cla05g02700 1262 Pfam Domain of unknown function (DUF3452) 337 476 IPR024599 -
Cla05g02700 1262 MobiDBLite consensus disorder prediction 631 650 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61205 PF01858 RB_A 1.80E-63 CL0065 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02700 K04681 - csv:101219810 1909.81