Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00005 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCGTCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGTGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGATATGGATGATGTGTGTTTTTTATGTCATGGACCAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGCTGAAGGATGAATTGGACCGGGTTTGTGCACTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGGGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGTATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGTTCCAACTGCCTTTGTTCCTTATTTCTCAGTCAAAACGTGTGCAGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAACTTCAAGTGCTCTCACCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGTGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGACATGCCCAACGGGTATTCCAAGGTTCCATCCAAGAGCCATTTTCTGTGGTTTTGATGTTTCTGGTCCTCTCTTACATTTATTTTACCTTTGCCATTGAATGCCATTTTCCACAAAACATTCAAGTTCAAGTGAAAATGAAGAAAAAGAAGGGATCAAAATTCAAAGCCATTCCCATTCTCCAGTTGCCCATTTCCGAATTTCCAATTCCCAAGTCAGAATTTAAAAGTTTAATGAATGCAACTGTGTCTGAACTGGTTCCAGCCTTTCTCATCTGGTCAATCTGCTGGGATCATGCTTTGACTTGGTTTGGAGATATTATTGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACCGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCGCAGCGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2877 52.07 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGVGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKIWMMCVFYVMDQTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSFQLPLFLISQSKRVQNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGHAQRVFQGSIQEPFSVVLMFLVLSYIYFTFAIECHFPQNIQVQVKMKKKKGSKFKAIPILQLPISEFPIPKSEFKSLMNATVSELVPAFLIWSICWDHALTWFGDIIVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79777 85305 - ClCG06G000060.2 Cla06g00005 274197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00005 958 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 541 IPR042160 -
Cla06g00005 958 SUPERFAMILY Homeodomain-like 116 189 IPR009057 -
Cla06g00005 958 MobiDBLite consensus disorder prediction 94 141 - -
Cla06g00005 958 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Cla06g00005 958 Pfam Homeodomain 134 189 IPR001356 GO:0003677
Cla06g00005 958 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 79 541 - -
Cla06g00005 958 SMART HOX_1 132 195 IPR001356 GO:0003677
Cla06g00005 958 SUPERFAMILY Bet v1-like 718 951 - -
Cla06g00005 958 Coils Coil 244 264 - -
Cla06g00005 958 MobiDBLite consensus disorder prediction 95 114 - -
Cla06g00005 958 Coils Coil 204 229 - -
Cla06g00005 958 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 647 956 - -
Cla06g00005 958 Pfam START domain 354 540 IPR002913 GO:0008289
Cla06g00005 958 Pfam START domain 648 690 IPR002913 GO:0008289
Cla06g00005 958 SUPERFAMILY Bet v1-like 354 690 - -
Cla06g00005 958 SMART START_1 354 690 IPR002913 GO:0008289
Cla06g00005 958 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Cla06g00005 958 CDD homeodomain 133 189 IPR001356 GO:0003677
Cla06g00005 958 Gene3D - 121 192 - -
Cla06g00005 958 CDD START_ArGLABRA2_like 349 689 - -
Cla06g00005 958 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 647 956 IPR042160 -
Cla06g00005 958 ProSiteProfiles START domain profile. 345 693 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00193 Cla06g00005 CCT
Cla05g00193 Cla06g00005 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00005 Cla-Chr6:79777 Cla02g00833 Cla-Chr2:11320437 1.93E-120 dispersed
Cla05g00193 Cla-Chr5:1738233 Cla06g00005 Cla-Chr6:79777 6.83E-143 wgd
Cla05g00862 Cla-Chr5:8530092 Cla06g00005 Cla-Chr6:79777 2.64E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61206 PF01852 START 3.00E-28 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00005 K09338 - csv:101222248 917.916