Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00015 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCGCCCAAGAGACCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCAACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGCCTCGAATGGCGTCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCTGTGATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1029 56.95 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVQAGTVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 195568 196596 + ClCG06G000180.1 Cla06g00015 274207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00015 342 MobiDBLite consensus disorder prediction 1 19 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 1 52 - -
Cla06g00015 342 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cla06g00015 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 340 IPR005333 GO:0003700
Cla06g00015 342 MobiDBLite consensus disorder prediction 67 88 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 164 178 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 151 178 - -
Cla06g00015 342 Pfam TCP family transcription factor 76 169 IPR017887 -
Cla06g00015 342 PANTHER TRANSCRIPTION FACTOR TCP9 28 340 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 263 315 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02451 Cla-Chr5:35942771 Cla06g00015 Cla-Chr6:195568 8.15E-38 dispersed
Cla06g00015 Cla-Chr6:195568 Cla06g01596 Cla-Chr6:29505943 8.91E-38 dispersed
Cla05g00839 Cla-Chr5:8313432 Cla06g00015 Cla-Chr6:195568 7.74E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61208 PF03634 TCP 6.50E-30 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00015 - - bhj:120068861 565.844