Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00015 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCGCCCAAGAGACCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCAACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGCCTCGAATGGCGTCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCTGTGATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1029 56.95 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVQAGTVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 195568 196596 + ClCG06G000180.1 Cla06g00015 274207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00015 342 MobiDBLite consensus disorder prediction 1 19 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 1 52 - -
Cla06g00015 342 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cla06g00015 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 340 IPR005333 GO:0003700
Cla06g00015 342 MobiDBLite consensus disorder prediction 67 88 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 164 178 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 151 178 - -
Cla06g00015 342 Pfam TCP family transcription factor 76 169 IPR017887 -
Cla06g00015 342 PANTHER TRANSCRIPTION FACTOR TCP9 28 340 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 263 315 - -
Cla06g00015 342 MobiDBLite consensus disorder prediction 74 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00015 - - - bhj:120068861 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02451 Cla-Chr5:35942771 Cla06g00015 Cla-Chr6:195568 8.15E-38 dispersed
Cla06g00015 Cla-Chr6:195568 Cla06g01596 Cla-Chr6:29505943 8.91E-38 dispersed
Cla05g00839 Cla-Chr5:8313432 Cla06g00015 Cla-Chr6:195568 7.74E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00808 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.4e-68 255.0
Cla02g01393 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.9e-57 218.0
Cla06g00015 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cla05g02451 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.9e-41 165.2
Cla04g01209 CCT,ECH 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.7e-39 161.0
Cla11g01311 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cla11g01311 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cla05g01434 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.2e-60 229.2
Cla01g00808 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.0e-63 237.3
Cla02g01393 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.4e-61 230.7
Cla11g01311 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.5e-42 170.6
Cla07g01574 . 68 193 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61208 PF03634 TCP 6.50E-30 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00015 Cla_Chr06 FPKM 11.997127 13.020333 13.453054 13.649012 18.862444 19.237326 21.277552 26.676992 27.741407 27.29521