Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00016 | ATGAGAATCAGATGGAGGAAAATGAAAGGAAAAGTGAAGCTGAAACCAAATTCGATGCGAAGATTCACTCCATTCTCTTCCGTCATCAATCAATCTCTCAATAAGGATCCATTTTGTCCTCAACCTCATCATTTTGATTACGCGCTTAAGATCATAACCCAATTCGTCCATTCTTTAATTATAGCTTTGCAACTTTCGGTTATGGATAATTACGGCTCTTCACCTTCGTATCCATACCACAATCCTTACGCATACCCTCGTCCAGTTGCTCCTCAATACCCACCTCCTTCTCAATATCCTCCTCCTTCTCAATATCCTCCTCCTCCTCATTATACACATCCAAATTCAGATCCCTATGCTCGTCCTGCTTACCCTTATCCCTATAATCCTTCACATGCCTCTCCATTTGCATATCCCCCACCCCCATCTCATTCTGGCCTAGTAGAGTATTTTCCACACCCACCTGCACATTCTAGCCCTCTACCTTACCCATATCCTTACTCTGATGCCTCATCTACTGGTGGTGCTAGACCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCGGTATCAAGAATCTAATACATACCCTCCACCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATAGGAACGATAGCACTGATTCTGCATCATCTGTCTCTTCTGCATACCCGCCTCTGGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCTGCAGCACCTGCACCTGCACCTGCACAGCCTTCAGCTTCGTTATTGGCAAATTCACCTCAAAGTGCGAGATATGATCGGCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTTGACACGGGGAATTCAGATCAAATGGTTACATCCAAACAACCTTCATTTTCCCATTCAAGCTCATTCAGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCCTTGCATAGTAAAGCATCATTGAGAGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACCTTAGGGGATATGTTTGCAAAATTACCTGGGAACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGTGATCCTTATGTATCGATCAATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCTGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTGATAGGAACGGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATGGTTGAAGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAACCTGGAGCAGCTCTAAGTATTTCTATTCAGTATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGATGGGCACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTAGCTATGGGACAGAGTGTACCCTTGGAGATCTGCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAACACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTTGGAACTATATATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATCATAGCTTTTGTTGGAGGGCTTGATTTATGTGATGGGCGGTATGATACTCCATTACATCCCATATTTCGGACCCTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGCGTTGTTGGTTGTCCAAGAGAACCATGGCATGATCTACACAGCAAAATTGATGGTCCAGCTGCATATGATGTTTTGACTAACTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGCACTGCACTAATGAAAATGACCCAGAATCATGGCATGTCCAGATTTTTCGCTCAATTGATTCAACTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGATATGAGTATACACACAGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCTAATAAAGATATAGGTGCCAACAATTTGATTCCGATGGAAATTGCGCTAAAGATTGCTGATAAAATAAGAGCAAATGAGAGGTTTGCTGCATACATTGTCATCCCCATGTGGCCTGAGGGTGTTCCAACCGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCGTTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCTTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACGGGAACTACCGAGGAGTGTTTCAACCACCCAGAGAGCCTGGAATGTGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAAAGGACACCTACTGAAGTACCCCGTCGAAGTCGATAGAAGAGGAAGAGTAAGATCACTTCCTGGTCATGAAAATTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCAGGAGAACCTCACTATATAA | 3498 | 42.6 | MRIRWRKMKGKVKLKPNSMRRFTPFSSVINQSLNKDPFCPQPHHFDYALKIITQFVHSLIIALQLSVMDNYGSSPSYPYHNPYAYPRPVAPQYPPPSQYPPPSQYPPPPHYTHPNSDPYARPAYPYPYNPSHASPFAYPPPPSHSGLVEYFPHPPAHSSPLPYPYPYSDASSTGGARPSIQYHNNFQPGSSPYRYQESNTYPPPESQYPPPPSRVNSFSGHYRNDSTDSASSVSSAYPPLDDLLCNVHLSDHQPTAPASPPAPAAAPAPAPAQPSASLLANSPQSARYDRRDRFYGFPNSSFSSFDTGNSDQMVTSKQPSFSHSSSFSGSQHSQNLQIVPLHSKASLRVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGRVSHKITSDPYVSINVANAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAIPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTSYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPLHPIFRTLQTVHKDDYHNPTYTGSVVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIIGISEAHCTNENDPESWHVQIFRSIDSTSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVVYKALMEVGLEDAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHTGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMKGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI | 1165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 201686 | 212979 | - | ClCG06G000190.2 | Cla06g00016 | 274208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00016 | 1165 | Pfam | C2 domain | 354 | 480 | IPR000008 | - | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
Cla06g00016 | 1165 | SUPERFAMILY | Phospholipase D/nuclease | 837 | 1097 | - | - | |
Cla06g00016 | 1165 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 678 | 713 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | SMART | C2_3c | 355 | 477 | IPR000008 | - | |
Cla06g00016 | 1165 | PANTHER | PHOSPHOLIPASE D ALPHA 1 | 256 | 1165 | - | - | |
Cla06g00016 | 1165 | Pfam | Phospholipase D C terminal | 1085 | 1155 | IPR024632 | - | |
Cla06g00016 | 1165 | Gene3D | Endonuclease Chain A | 825 | 1061 | - | - | |
Cla06g00016 | 1165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 352 | 501 | IPR035892 | - | |
Cla06g00016 | 1165 | ProSiteProfiles | C2 domain profile. | 332 | 478 | IPR000008 | - | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 306 | 329 | - | - | |
Cla06g00016 | 1165 | CDD | C2_plant_PLD | 349 | 500 | - | - | |
Cla06g00016 | 1165 | Gene3D | C2 domain | 349 | 492 | IPR035892 | - | |
Cla06g00016 | 1165 | PANTHER | PHOSPHOLIPASE D | 256 | 1165 | IPR015679 | - | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 256 | 270 | - | - | |
Cla06g00016 | 1165 | Gene3D | Endonuclease Chain A | 556 | 792 | - | - | |
Cla06g00016 | 1165 | SUPERFAMILY | Phospholipase D/nuclease | 519 | 778 | - | - | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 250 | 285 | - | - | |
Cla06g00016 | 1165 | Pfam | Phospholipase D Active site motif | 679 | 713 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | Pfam | Phospholipase D Active site motif | 1012 | 1038 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | SMART | pld_4 | 1011 | 1038 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | SMART | pld_4 | 678 | 713 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 162 | 235 | - | - | |
Cla06g00016 | 1165 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 1011 | 1038 | IPR001736 | GO:0003824 | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 172 | 202 | - | - | |
Cla06g00016 | 1165 | MobiDBLite | consensus disorder prediction | 90 | 124 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02012 | Cla-Chr1:34738695 | Cla06g00016 | Cla-Chr6:201686 | 0 | dispersed | |
Cla06g00016 | Cla-Chr6:201686 | Cla10g00328 | Cla-Chr10:4258401 | 0 | dispersed | |
Cla06g00016 | Cla-Chr6:201686 | Cla08g01396 | Cla-Chr8:26830441 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00016 | K01115 | - | csv:101218942 | 1987.23 |