Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00019 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACGACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGTAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACCGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGCATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 741 45.61 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAERQTQNWFQEISKLKAKYESLCRTHSRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLTAIQSFWSSGSGSAEHANNFPLHPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKSMTCETNFIQGWVI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 245023 249765 + ClCG06G000220.2 Cla06g00019 274211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00019 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 230 - -
Cla06g00019 246 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00019 246 PANTHER MADS BOX PROTEIN 1 230 - -
Cla06g00019 246 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Cla06g00019 246 Coils Coil 120 172 - -
Cla06g00019 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla06g00019 246 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cla06g00019 246 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00019 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla06g00019 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00363 Cla-Chr3:4173515 Cla06g00019 Cla-Chr6:245023 6.25E-48 dispersed
Cla03g00684 Cla-Chr3:8285530 Cla06g00019 Cla-Chr6:245023 1.80E-52 dispersed
Cla06g00019 Cla-Chr6:245023 Cla06g00195 Cla-Chr6:2321007 5.31E-75 dispersed
Cla06g00019 Cla-Chr6:245023 Cla06g00020 Cla-Chr6:251505 1.96E-46 tandem
Cla05g01900 Cla-Chr5:30837316 Cla06g00019 Cla-Chr6:245023 5.63E-32 transposed
Cla10g01155 Cla-Chr10:26113807 Cla06g00019 Cla-Chr6:245023 2.29E-40 transposed
Cla01g00316 Cla-Chr1:3354653 Cla06g00019 Cla-Chr6:245023 2.00E-44 wgd
Cla05g00830 Cla-Chr5:8142021 Cla06g00019 Cla-Chr6:245023 2.80E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61209 PF01486 K-box 6.60E-27 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00019 K09264 - csv:101219421 416.772