Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00020 ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA 681 41.85 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 251505 262588 - ClCG06G000230.2 Cla06g00020 274212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00020 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 Coils Coil 128 174 - -
Cla06g00020 226 Coils Coil 98 118 - -
Cla06g00020 226 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00020 226 PANTHER MADS BOX PROTEIN 1 216 - -
Cla06g00020 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 PANTHER MADS-BOX PROTEIN SOC1 1 216 - -
Cla06g00020 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cla06g00020 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cla06g00020 226 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Cla06g00020 226 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Cla06g00020 226 Pfam K-box region 95 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla06g00020 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00316 Cla-Chr1:3354653 Cla06g00020 Cla-Chr6:251505 1.18E-69 dispersed
Cla05g00211 Cla-Chr5:1884372 Cla06g00020 Cla-Chr6:251505 8.98E-74 dispersed
Cla05g00836 Cla-Chr5:8269944 Cla06g00020 Cla-Chr6:251505 8.86E-63 dispersed
Cla06g00020 Cla-Chr6:251505 Cla03g00684 Cla-Chr3:8285530 8.33E-46 dispersed
Cla10g00779 Cla-Chr10:15060835 Cla06g00020 Cla-Chr6:251505 2.54E-10 dispersed
Cla10g00943 Cla-Chr10:22268981 Cla06g00020 Cla-Chr6:251505 1.37E-43 dispersed
Cla06g00019 Cla-Chr6:245023 Cla06g00020 Cla-Chr6:251505 1.96E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61210 PF01486 K-box 1.70E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00020 - - bhj:120069607 400.208