Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00029 | ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTAGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAAGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA | 840 | 57.14 | MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 337812 | 338651 | - | ClCG06G000320.1 | Cla06g00029 | 274221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00029 | 279 | Gene3D | - | 94 | 224 | - | - | |
Cla06g00029 | 279 | ProSiteProfiles | PPC domain profile profile. | 91 | 231 | IPR005175 | - | |
Cla06g00029 | 279 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 5 | 279 | IPR014476 | GO:0003680 | |
Cla06g00029 | 279 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 95 | 207 | IPR005175 | - | |
Cla06g00029 | 279 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 | 5 | 279 | - | - | |
Cla06g00029 | 279 | MobiDBLite | consensus disorder prediction | 55 | 71 | - | - | |
Cla06g00029 | 279 | CDD | DUF296 | 95 | 206 | IPR005175 | - | |
Cla06g00029 | 279 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 218 | - | - | |
Cla06g00029 | 279 | MobiDBLite | consensus disorder prediction | 216 | 244 | - | - | |
Cla06g00029 | 279 | MobiDBLite | consensus disorder prediction | 28 | 53 | - | - | |
Cla06g00029 | 279 | MobiDBLite | consensus disorder prediction | 28 | 85 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00274 | Cla-Chr5:2486749 | Cla06g00029 | Cla-Chr6:337812 | 4.93E-69 | dispersed | |
Cla06g00029 | Cla-Chr6:337812 | Cla06g00647 | Cla-Chr6:7991313 | 4.67E-65 | dispersed | |
Cla01g00339 | Cla-Chr1:3653470 | Cla06g00029 | Cla-Chr6:337812 | 6.44E-90 | wgd | |
Cla05g00231 | Cla-Chr5:2071941 | Cla06g00029 | Cla-Chr6:337812 | 2.64E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00029 | - | - | csv:101220133 | 465.307 |