Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00029 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTAGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAAGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.14 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 337812 338651 - ClCG06G000320.1 Cla06g00029 274221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00029 279 Gene3D - 94 224 - -
Cla06g00029 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cla06g00029 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 279 IPR014476 GO:0003680
Cla06g00029 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Cla06g00029 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 279 - -
Cla06g00029 279 MobiDBLite consensus disorder prediction 55 71 - -
Cla06g00029 279 CDD DUF296 95 206 IPR005175 -
Cla06g00029 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cla06g00029 279 MobiDBLite consensus disorder prediction 216 244 - -
Cla06g00029 279 MobiDBLite consensus disorder prediction 28 53 - -
Cla06g00029 279 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00274 Cla-Chr5:2486749 Cla06g00029 Cla-Chr6:337812 4.93E-69 dispersed
Cla06g00029 Cla-Chr6:337812 Cla06g00647 Cla-Chr6:7991313 4.67E-65 dispersed
Cla01g00339 Cla-Chr1:3653470 Cla06g00029 Cla-Chr6:337812 6.44E-90 wgd
Cla05g00231 Cla-Chr5:2071941 Cla06g00029 Cla-Chr6:337812 2.64E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00029 - - csv:101220133 465.307