Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00031 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGTGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGGGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGATGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGCCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTTCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA | 723 | 61.13 | MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 357930 | 360836 | - | ClCG06G000340.1 | Cla06g00031 | 274223 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00031 | 240 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
| Cla06g00031 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 226 | - | - | |
| Cla06g00031 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 127 | IPR004883 | - | |
| Cla06g00031 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 226 | - | - | |
| Cla06g00031 | 240 | MobiDBLite | consensus disorder prediction | 185 | 219 | - | - | |
| Cla06g00031 | 240 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - | |
| Cla06g00031 | 240 | ProSiteProfiles | LOB domain profile. | 28 | 130 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g00031 | Cla-Chr6:357930 | Cla07g00086 | Cla-Chr7:976436 | 6.04E-55 | dispersed | |
| Cla06g00031 | Cla-Chr6:357930 | Cla06g00032 | Cla-Chr6:375668 | 9.52E-63 | tandem | |
| Cla09g00749 | Cla-Chr9:7412634 | Cla06g00031 | Cla-Chr6:357930 | 3.33E-46 | transposed | |
| Cla10g01510 | Cla-Chr10:30343813 | Cla06g00031 | Cla-Chr6:357930 | 2.57E-51 | transposed | |
| Cla05g00235 | Cla-Chr5:2110702 | Cla06g00031 | Cla-Chr6:357930 | 1.71E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61211 | PF03195 | LOB | 2.70E-38 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00031 | K21994 | - | csv:101220603 | 378.637 |