Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00031 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGTGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGGGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGATGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGCCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTTCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 61.13 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 357930 360836 - ClCG06G000340.1 Cla06g00031 274223
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00031 240 MobiDBLite consensus disorder prediction 135 155 - -
Cla06g00031 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 226 - -
Cla06g00031 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cla06g00031 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 226 - -
Cla06g00031 240 MobiDBLite consensus disorder prediction 185 219 - -
Cla06g00031 240 MobiDBLite consensus disorder prediction 134 158 - -
Cla06g00031 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00031 Cla-Chr6:357930 Cla07g00086 Cla-Chr7:976436 6.04E-55 dispersed
Cla06g00031 Cla-Chr6:357930 Cla06g00032 Cla-Chr6:375668 9.52E-63 tandem
Cla09g00749 Cla-Chr9:7412634 Cla06g00031 Cla-Chr6:357930 3.33E-46 transposed
Cla10g01510 Cla-Chr10:30343813 Cla06g00031 Cla-Chr6:357930 2.57E-51 transposed
Cla05g00235 Cla-Chr5:2110702 Cla06g00031 Cla-Chr6:357930 1.71E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61211 PF03195 LOB 2.70E-38 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00031 K21994 - csv:101220603 378.637