Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00032 ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGCCAAGGCGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGATCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGCGACAGCCTGCTCCCGGAAACGATACCGGGCTCCGACATGGGTTTGATGTCCAACGTTCCAATGCTCCTTGATCCCCTCCAAACGCAGCTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTCCTCTATAAAGGTGCTCCATGGTACTATTAGGACTTCCATCGTACTGCTAGATCCTCTACTGAGTTTCTTCCTTTCCTTCTTCTTCTTCTCCTGTTTCTTGCCCCCCTTGGTGAGTTCCAAGCACCGAAACATCGTCCTTCAATTGGTCGAAATCATTCGGGTGGTGAAATCGAGTCGTGCATCGGTATTCCTTGCATCTAATGCCATCATTTTCATCCTGTTCAGCGAGAAGTTTAAGCGGTTATTGAGCAAAGGAGAAGGGATAGAAGAACTGGTAGAAAGCTGTAAAGATTGTAGTAGACATAGCAATGAGATGAATAGTAGTGATGAAATTTGTATTGATGATAGTTTTGAAGAAGATTGTGAAGAAGGGCTTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATCGACATGATGAATGCTTTTTGGAGGGAAGAATTGATTTGTGATAGGTTTCTTTAG 1107 48.15 MTHTHTPIGLHQEALMSGGGGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDSLLPETIPGSDMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRSSIKVLHGTIRTSIVLLDPLLSFFLSFFFFSCFLPPLVSSKHRNIVLQLVEIIRVVKSSRASVFLASNAIIFILFSEKFKRLLSKGEGIEELVESCKDCSRHSNEMNSSDEICIDDSFEEDCEEGLQDDIEKKAQEFIDMMNAFWREELICDRFL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 375668 383554 + ClCG06G000350.2 Cla06g00032 274224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00032 368 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 22 216 - -
Cla06g00032 368 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Cla06g00032 368 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 216 - -
Cla06g00032 368 Coils Coil 115 135 - -
Cla06g00032 368 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00235 Cla-Chr5:2110702 Cla06g00032 Cla-Chr6:375668 4.83E-48 dispersed
Cla06g00032 Cla-Chr6:375668 Cla07g00087 Cla-Chr7:988887 8.57E-48 dispersed
Cla06g00031 Cla-Chr6:357930 Cla06g00032 Cla-Chr6:375668 9.52E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61212 PF03195 LOB 7.70E-36 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00032 - - csv:101220840 352.058