Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00040 ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTTGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGTTTGTAATCCATTTTGTTTCGATCTCTGTCTGGTGCCCTTCGTTCAATCTCGCAGGAGTCTTTCGCGAGGTGCTTGTTATGTATTTTCCTATTCGTTTTGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCGGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCAAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGATGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCGAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTATTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGATACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCCCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGCATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAAGGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGATGACGACTTTTAG 3453 45.41 MRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLVCNPFCFDLCLVPFVQSRRSLSRGACYVFSYSFCSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGKGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 435332 451668 - ClCG06G000440.2 Cla06g00040 274232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00040 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Cla06g00040 1150 Coils Coil 1117 1144 - -
Cla06g00040 1150 Pfam Protein kinase domain 110 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00040 1150 CDD STKc_AMPK_alpha 107 362 - -
Cla06g00040 1150 CDD AMPKA_C 480 603 - -
Cla06g00040 1150 SMART uba_6 385 422 IPR015940 -
Cla06g00040 1150 MobiDBLite consensus disorder prediction 1114 1143 - -
Cla06g00040 1150 Gene3D Transferase(Phosphotransferase) domain 1 103 441 - -
Cla06g00040 1150 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Cla06g00040 1150 SMART PINT_4 1008 1101 IPR000717 -
Cla06g00040 1150 SMART serkin_6 110 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00040 1150 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 383 423 IPR015940 -
Cla06g00040 1150 Pfam PCI domain 974 1079 IPR000717 -
Cla06g00040 1150 ProSiteProfiles PCI domain profile. 902 1083 IPR000717 -
Cla06g00040 1150 ProSiteProfiles Protein kinase domain profile. 110 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00040 1150 SUPERFAMILY Winged helix DNA-binding domain 1010 1084 IPR036390 -
Cla06g00040 1150 CDD UBA_SnRK1_plant 384 424 - -
Cla06g00040 1150 Pfam Proteasome regulatory subunit C-terminal 1083 1149 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cla06g00040 1150 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 666 1150 - -
Cla06g00040 1150 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 557 605 IPR001772 -
Cla06g00040 1150 Pfam UBA/TS-N domain 384 420 IPR015940 -
Cla06g00040 1150 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 666 1150 - -
Cla06g00040 1150 SUPERFAMILY Protein kinase-like (PK-like) 107 363 IPR011009 -
Cla06g00040 1150 MobiDBLite consensus disorder prediction 1114 1150 - -
Cla06g00040 1150 Gene3D - 917 1102 - -
Cla06g00040 1150 Pfam Kinase associated domain 1 563 604 IPR001772 -
Cla06g00040 1150 Gene3D Kinase associated domain 1, KA1 486 605 - -
Cla06g00040 1150 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1008 1101 - -
Cla06g00040 1150 SUPERFAMILY KA1-like 419 605 IPR028375 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00415 Cla-Chr2:4086049 Cla06g00040 Cla-Chr6:435332 0 dispersed
Cla02g02057 Cla-Chr2:35606040 Cla06g00040 Cla-Chr6:435332 3.28E-42 dispersed
Cla06g00040 Cla-Chr6:435332 Cla11g00052 Cla-Chr11:684173 1.64E-180 dispersed
Cla11g00659 Cla-Chr11:7677925 Cla06g00040 Cla-Chr6:435332 7.10E-07 dispersed
Cla06g00040 Cla-Chr6:435332 Cla03g00613 Cla-Chr3:7315854 1.20E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80606 PF00069 Pkinase 1.30E-79 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00040 K07198 - csv:101211720 1009.59