Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00048 ATGGGCGGCGGAGGTGAAGGAACGACGCTGGAATTCACTCCGACGTGGGTTGTAGCCGCCGTCTGTACCGTCATCGTCGCCATTTCGCTCGCTTTAGAGCGTCTCCTTCACTTCCTCGGCAAATACCTCAAGAAGAAGAACCAGAAGCCGCTCAATGAAGCTCTTCAGAAAGTTAAAGAAGAATTGATGCTTTTGGGGTTTATTTCGCTTCTGCTCACTGTATTTCAAGGCACCATCTCTAAATTGTGTGTTCCTGAGAGTTTGACTGAGCATTTACTTCCGTGTGATCTGAAGGATAAAGCTAAAGCTGAACATGGTTCGCCCTCGGGTGAAACTGGTTCGTCAACGACAACGCATTTTCAAACGTTCTTTGTTTCGAGTATTTCTGGTACGGCCAGGCGCCTTCTTTCTGAGGGATCGGCTTCACAGACTGGTTACTGTGCCAAAAAGAATAAGGTGCCATTGCTATCACTTGAAGCATTGCATCATCTACATATTTTTATCTTCATCCTAGCTATCGTCCATGTGACATTTTGCGTTCTCACTGTAGTTTTTGGAGGATTGAAGATTCGTCAGTGGAAGCATTGGGAGGATTCTATTGCAAAAGAGAATTATGATACCGAACAAGTTCTAAAACCAAAAGTCACCCATGTCCATCAACATGCTTTTATCAAGGACCACTTTTTGGGCTTTGGTAAAGATTCAGCTCTTCTTGGTTGGTTGCATTCCTTCCTCAAGCAATTTTATGCTTCTGTAACAAAATCAGATTATGCAACGTTACGGCTTGGTTTCATTATGACGCACTGCAGGGGAAACCCGAAGTTTAATTTTCACAAGTACATGATACGTGCCCTTGAAGATGACTTCAAGCATGTTGTTGGTATCAGGCAAGTAATATCTGGAACTGGAAGTACCCTTTTATTTTTAGCTGCCGGATATCTCAATTTTGTAGTTGTGCCAATCATGATACATTTTCAGCGTCATTTTTCTTTTCCCCAGTTCTCTCATTTTTACAATTTTTGTTGCAGTTGGTATCTTTGGATATTCGTGGTTGTCTTCTTGTTCCTTAATGTTAGTGGTTGGCATACATATTTCTGGATAGCATTCATTCCTTTCATTCTTCTGCTCGCTGTGGGAACGAAGTTGGAACATGTGATAACCCAGCTGGCTCATGAGGTTGCAGAGAAGCATGTAGCAATCGAAGGTGATCTAGTAGTCCAACCGTCCGATGATCACTTTTGGTTTCATCGTCCCCGTATTGTTCTCTTCTTGATTCACTTTATACTTTTCCAAAACGCTTTTGAGATTGGATTCTTCTTCTGGATATGGGTTCAATATGGCTTTGACTCGTGCATCATGGGACAAGTCCGCTATATCATTCCAAGGCTCATCATTGGGGTATTTGTTCAGGTTCTTTGCAGCTACAGCACCCTACCGCTCTACGCCATTGTCACTCAGATGGGAAGTTCTTTCAAGAAAGCAATCTTTGATGAACATGTACAAGTAGGCCTAGTTGGTTGGGCTCAGAAGGTGAAGAAAAGAAAAGGACTTAGAGCAGCTGCTGATGGGTCCAGCCAAGGAGGGAAGGAAGGTGGTTCTACTGTGGGGATTCAACTGGGAAATGTTATGCGCAAGGCTTCTGCTCCTAATGAAATTAAGCCTGATGACCCCAAATCAAATGATCTGCCTTAG 1692 43.26 MGGGGEGTTLEFTPTWVVAAVCTVIVAISLALERLLHFLGKYLKKKNQKPLNEALQKVKEELMLLGFISLLLTVFQGTISKLCVPESLTEHLLPCDLKDKAKAEHGSPSGETGSSTTTHFQTFFVSSISGTARRLLSEGSASQTGYCAKKNKVPLLSLEALHHLHIFIFILAIVHVTFCVLTVVFGGLKIRQWKHWEDSIAKENYDTEQVLKPKVTHVHQHAFIKDHFLGFGKDSALLGWLHSFLKQFYASVTKSDYATLRLGFIMTHCRGNPKFNFHKYMIRALEDDFKHVVGIRQVISGTGSTLLFLAAGYLNFVVVPIMIHFQRHFSFPQFSHFYNFCCSWYLWIFVVVFLFLNVSGWHTYFWIAFIPFILLLAVGTKLEHVITQLAHEVAEKHVAIEGDLVVQPSDDHFWFHRPRIVLFLIHFILFQNAFEIGFFFWIWVQYGFDSCIMGQVRYIIPRLIIGVFVQVLCSYSTLPLYAIVTQMGSSFKKAIFDEHVQVGLVGWAQKVKKRKGLRAAADGSSQGGKEGGSTVGIQLGNVMRKASAPNEIKPDDPKSNDLP 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 532740 540016 + ClCG06G000560.2 Cla06g00048 274240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00048 563 PANTHER MLO-LIKE PROTEIN 1 2 296 IPR004326 GO:0006952|GO:0016021
Cla06g00048 563 MobiDBLite consensus disorder prediction 541 563 - -
Cla06g00048 563 Pfam Mlo family 8 309 IPR004326 GO:0006952|GO:0016021
Cla06g00048 563 Pfam Mlo family 342 523 IPR004326 GO:0006952|GO:0016021
Cla06g00048 563 MobiDBLite consensus disorder prediction 549 563 - -
Cla06g00048 563 PANTHER MLO-LIKE PROTEIN 342 551 - -
Cla06g00048 563 PANTHER MLO-LIKE PROTEIN 2 296 - -
Cla06g00048 563 PANTHER MLO-LIKE PROTEIN 1 342 551 IPR004326 GO:0006952|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00031 Cla-Chr2:388756 Cla06g00048 Cla-Chr6:532740 1.24E-13 dispersed
Cla02g00032 Cla-Chr2:390894 Cla06g00048 Cla-Chr6:532740 1.65E-09 dispersed
Cla02g00033 Cla-Chr2:395408 Cla06g00048 Cla-Chr6:532740 7.62E-147 dispersed
Cla06g00048 Cla-Chr6:532740 Cla09g01826 Cla-Chr9:35928064 3.29E-110 dispersed
Cla06g00048 Cla-Chr6:532740 Cla02g02050 Cla-Chr2:35566020 2.67E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00048 K08472 - csv:101211868 969.148