Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00057 ATGAAACAAAAACTGATGGAATTACGTTCTACGCTAATTTTGGCATATTTGAAGCTATGCATTCAAAGAAAAGGACAATTTTGGTTACATCAGTCATCAACCATCGTTGGATCCAACCACTTTCTTACCCACCCTTCTGGTATGGCCTACCGACCCAACCATTCCCCTAACGCTTTTTTCAATCATTATTCTCCCCAGGCCTCCGCCATGAAAATAAAGCAGAGAAAAGCTCCACAAATTCCCCTTCTTCCAATCAAAAAACAGAAAAGGATGCTGAACCAACCTGGACAATGGGTGGTGCTGGTGGCGGCAATATGGATTCAGGCATTTGCAGGCACAAATTTTGATTTCCCCTCTTATTCTTCCGATCTGAAGGCGGCTCTGGGGATGTCGCAGGTGGAGCTCAACTATCTGGCGGTGGCTTCCGACCTTGGCAAGGCCTTCGGGTGGTGCTCTGGCGTCGCTCTCTTATATTTTCCTTTGTGGGTGGTGATGTTCATGGCTGCTTCCATGGGGTTTCTTGGCTATGGCCTCCAATGGCTTCTCCTTCAAAGGATTGTCTATCTGCCTTACTCTATGGTTTATCTTCTCTGCTTGATGGCTGGATGTAGTATTTGCTGGTTCAACACGGTCTGCTATGTCTCATGTATCCAAAATTTTCCAGCCAACCGTGCCCTTGCATTGTCCTTGATTGTCAGCTTTAATGGCGTCAGTGCAGCTCTATACACCCTAATTGCCAATGCAGTAGACCCCAATGATGCCGGTTTGTACCTCTTCCTAAATGCACTGGTTCCTCTCATCATCTCTATCGTTGCCCTCCTCCCAATCCTTCATCAGCCATCAGTTCAACCATCCTCTGCTGATGCCATCCGCCATGACTCTCTCATCTTCATATGCTTATACATCACGGCCGTTATCACAGGGGTGTACTTAATCACCTTCAATTCCAAGCCTTCCTACAAATACAGGTCCCAAATTCTGTTAGCAGGGGCTCTTGCCCTTTTACTAGTTCCTCTTTGTTTGCCAGGAATTCTTAGTACACGCAGGTGGTTGGCTCGGATCATATCCACCAGCTTGAGCCGTCTTATTCACTCTAGATTTAACCTTGTTGATCATGAGCTTCACCAGGAGCTCATTGCTGTTGGAACAGAACGAAATGGTATGAAGGTCATCATCCCTTTTGATTCTAAAGAGAAGGAAAGCACTTCGAGGAAGGTGATGGAGAAAGAGAACTTGGTAATGCTTGAAGAAGAGCATTCGGCTAAGATGCTGTTGCGACGGTTGGACTTTTGGCTCTATTATGTTGCATACTTTTGTGGTGGTACGATTGGGTTGGTTTACAGCAACAATCTTGGACAAATTGCACAGTCGCTTGGATATAGTTCGTCAACAAGTTCACTTGTAACACTCTACTCTTCTTGCTCCTTCTTTGGGCGGTTAATCTCAGCAGCCCCAGATTTCATGCGTGAAAAGGTGCGTTTCGCCAGAACAGGGTGGCTAGCCATTGCACTGGTGCCAACTCCAATCGCCTTCATTTTACTCGCTGCATCAGGCAGCAAAATCGCATTACAAGCTGGCACTGGCTTGATCGGCCTAAGCTCGGGATTCATATTTTCAGCCTCAGTCTCAATCACATCAGAGTTATTCGGACCGAACAGTTCAGGGGTCAACCACAACATCCTCATAACTAACATCCCTCTTGGCTCGTTCCTCTACGGCGTCCTGGCGGCAGTGGCGTACGATTCAAACGCCGAAAGTTCACACCAGATGGCGGCGCTGGGGGACGCGGTAGTGTGCATCGGCCAGAATTGCTATCTGCAGACGTTCGTATGGTGGGCTTGCATCTCCATCTTCGGCCTGGCTTCTAGCTTCTTGCTTTTCCGACGGACGAGACCGGCTTACGACCGCCATTACGAGAGTAACCTAAGCAAGATGCAGCCATTTTAG 1947 47.66 MKQKLMELRSTLILAYLKLCIQRKGQFWLHQSSTIVGSNHFLTHPSGMAYRPNHSPNAFFNHYSPQASAMKIKQRKAPQIPLLPIKKQKRMLNQPGQWVVLVAAIWIQAFAGTNFDFPSYSSDLKAALGMSQVELNYLAVASDLGKAFGWCSGVALLYFPLWVVMFMAASMGFLGYGLQWLLLQRIVYLPYSMVYLLCLMAGCSICWFNTVCYVSCIQNFPANRALALSLIVSFNGVSAALYTLIANAVDPNDAGLYLFLNALVPLIISIVALLPILHQPSVQPSSADAIRHDSLIFICLYITAVITGVYLITFNSKPSYKYRSQILLAGALALLLVPLCLPGILSTRRWLARIISTSLSRLIHSRFNLVDHELHQELIAVGTERNGMKVIIPFDSKEKESTSRKVMEKENLVMLEEEHSAKMLLRRLDFWLYYVAYFCGGTIGLVYSNNLGQIAQSLGYSSSTSSLVTLYSSCSFFGRLISAAPDFMREKVRFARTGWLAIALVPTPIAFILLAASGSKIALQAGTGLIGLSSGFIFSASVSITSELFGPNSSGVNHNILITNIPLGSFLYGVLAAVAYDSNAESSHQMAALGDAVVCIGQNCYLQTFVWWACISIFGLASSFLLFRRTRPAYDRHYESNLSKMQPF 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 594928 598491 + ClCG06G000650.2 Cla06g00057 274249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00057 648 PANTHER NODULIN-LIKE/MFS TRANSPORTER 93 641 - -
Cla06g00057 648 Pfam Nodulin-like 97 342 IPR010658 -
Cla06g00057 648 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 93 641 - -
Cla06g00057 648 SUPERFAMILY MFS general substrate transporter 303 633 IPR036259 -
Cla06g00057 648 Gene3D MFS general substrate transporter like domains 294 601 IPR036259 -
Cla06g00057 648 SUPERFAMILY MFS general substrate transporter 64 277 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00020 Cla-Chr3:244950 Cla06g00057 Cla-Chr6:594928 7.48E-91 dispersed
Cla06g00057 Cla-Chr6:594928 Cla07g01067 Cla-Chr7:27273020 0 dispersed
Cla06g00057 Cla-Chr6:594928 Cla02g01155 Cla-Chr2:24894424 6.74E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00057 - - csv:101222963 1040.8