Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00061 ATGGCGGAATTTCTCGATTTGGAAGCACAGGACGGTGTCCGGATGCCGTGGAATGTGGTGCCAGGTACAAAGCAAGAAGCTAGCAACTGCATAGTTCCAATTTCCGCCTTGTACACGCCGATCAAAGCCTTCCCGAACATGCCGGTGCTACCTTACTCTCCGCTTCGATGTCGTACTTGTCGCTCTATTCTCAATCCTTTCTCCATTGTTGATTTCGCTGCGAAGATCTGGATCTGTCCCTTTTGCTTTCAGCGGAATCATTTCCCTCCTCATTACGCTTCTATGTCTGATGATAACCTTCCGGCCGAGCTATTCCCGCAGTATACTACAATTGAATACGAGTCGACTGGGGAAACGCCGTCTTCGGTTCCTCCAGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAAGAGGAGATTGCATTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTGCTTCCTGATAATTCGTTGGTTGGACTCATTACGTATGGTACTTTTGTTCACGTTCATGAGTTGGGGTTCAGTCAGATTCCGAAGACGTTTGTTTTTAAGGGCACCAAGGATGTGTCCAAGGAGCAGCTTCTGGAGCAGATGAATTTCTTCCTCAAGAAGCCCAAGCCCCCTACTGGTGTCATTGCTGGTGCTAGAGATGGACTTTCAACTGAGAGTATTGCTCGCTTTTTGCTGCCTAAGTCTGAGTGCGAATTTGCTCTCAATTCTGTTTTGGAGGAGCTACAGAAAGACCCTTGGGGAGTTCCAGCGGATCAGCGAGCCCCGAGGTGCACTGGGACTGCCCTGAGCATTGCCGCCAGCTTGCTAGGCGCTTGTGTTCCTGGTTCAGGAGCAAGAATCTTAGCGTTTGTTGGTGGGCCGTCGACTGAAGGACCGGGTGCCATTGTGTCTAAAAATTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCATAAAGCAGTGAAGTTTTATGAGGGACTCTCGAAGCAGCTAGTTCATCAAGGACATGTACTTGATCTTTTCGCTTGTGCTCTTGATCAGGTCGGCATTGCTGAACTTAAAGTTGCAGTTGAAAAGACTGGAGGGCTTGTTGTGCTTGCCGAAAGTTTTGGCCATTCTGTTTTTAAGGATTCCCTTAAACGTGTTTTTTCTGGTGAATATGATCTCGGCTTATCATCAAATGGTATATTTGAGATCAATTGCTCAAAGGATATCAAAATTCAGGGAGTTATTGGTCCCTGTGCGTCTCTTGAAAAGAAAGGTCCTTTGTGCTCAGACACTGTCGTTGGTCAAGGAAATACAAGTGCATGGAAAATGTGTGGCCTTGATAAAGCAACAACTTTGAGTCTCATATTTGAAATTGTTAAAAAAGAGAGCTCGGATGCTGCTGTTCAATCTGCCAGCAATCAGTTTTACTTTCAATTTTTGACATTTGATTCCAGTTATCAGAACAACAATGGTCAAATGAGACTCCGTGTTACAACTCTTTCTAGAAGATGGGTTGCTGGACCTGGAAGCATACAGGATTTGATTGCGGGGTTTGATCAAGAAGCTGCTGCTGCAGTCATGGCTCGTCTAGTTTCCTACAAGATGGAAAATGAGGCAGAGTTTGATCCTATAAGATGGTTGGATAAATCATTGATTCATCTTTGTTCCCGTTTTGGAGATTATCAGAAGGATACTCCATCTTCCTTCAGCCTATCTCCACGTTTCTCAATATTCCCTCAGTTTATCTTTCATTTACGGCGATCTCAGTTTGTGCAGGTTTTTAATAACAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTTGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCCCCAGAACCGGTTCTTCTTGATGTAGCTGCCATTGCAGCTGACAGGATTCTGCTATTGGATGCATATTTCACTGTTGTTATCTTCCACGGAGCAACTATTGCTCAATGGAGAAAAGCTGGGTATCACAATCAGCCGGAACATCAGGCGTTTGCTCAGTTGCTGCAAGCTCCGCGTGATGATGCAGATGCAACAATTAAGGAGAGATTTCCAGTACCACGTCTCGTGATCTGTGATCAGCACGGCTCGCAGGCACGTTTCCTTCTGGCAAAGCTGAATCCATCAGCCACCTATAACACTGAATCTCCCCTTCCAGGTGGAGATATTATCTTCACTGACGATGTCAGTTTCGAAGTCTTCTTGGATCATCTACAGAGATTAACCGTTCAATAA 2295 44.84 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPISALYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASMSDDNLPAELFPQYTTIEYESTGETPSSVPPVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLITYGTFVHVHELGFSQIPKTFVFKGTKDVSKEQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPKSECEFALNSVLEELQKDPWGVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGIAELKVAVEKTGGLVVLAESFGHSVFKDSLKRVFSGEYDLGLSSNGIFEINCSKDIKIQGVIGPCASLEKKGPLCSDTVVGQGNTSAWKMCGLDKATTLSLIFEIVKKESSDAAVQSASNQFYFQFLTFDSSYQNNNGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAAVMARLVSYKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPRDDADATIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTVQ 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 636776 645712 + ClCG06G000690.2 Cla06g00061 274253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00061 764 Gene3D Severin 624 728 IPR029006 -
Cla06g00061 764 Gene3D - 51 110 - -
Cla06g00061 764 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 764 IPR036180 -
Cla06g00061 764 Gene3D Sec23/Sec24 helical domain 519 761 - -
Cla06g00061 764 Pfam Sec23/Sec24 beta-sandwich domain 401 508 IPR012990 -
Cla06g00061 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 - -
Cla06g00061 764 Pfam Sec23/Sec24 helical domain 522 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cla06g00061 764 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cla06g00061 764 Pfam Gelsolin repeat 636 722 IPR007123 -
Cla06g00061 764 Gene3D von Willebrand factor, type A domain 124 398 IPR036465 -
Cla06g00061 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 IPR037364 -
Cla06g00061 764 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cla06g00061 764 SUPERFAMILY beta-sandwich domain of Sec23/24 4 521 - -
Cla06g00061 764 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cla06g00061 764 Gene3D - 8 505 - -
Cla06g00061 764 SUPERFAMILY vWA-like 123 391 IPR036465 -
Cla06g00061 764 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cla06g00061 764 CDD Sec23_C 614 734 IPR037550 GO:0030127|GO:0090114
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00044 Cla06g00061 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00767 Cla-Chr5:7298440 Cla06g00061 Cla-Chr6:636776 0 dispersed
Cla06g00061 Cla-Chr6:636776 Cla06g00627 Cla-Chr6:7685561 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00061 K14006 - csv:101211017 1493.02